# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1j2gA	319	1.48e+00			
1tc1A	220	3.84e+00	1tc1A	c.61.1.1	34083
1sdwA	314	4.31e+00		b.121.1.2	-3024
				b.121.1.2	-3025
1roaA	122	4.52e+00			
1phm	310	4.85e+00	1phm	b.121.1.2	59015
				b.121.1.2	59016
1bywA	110	4.94e+00	1bywA	d.110.3.6	40912
1uhvA	500	5.49e+00		b.71.1.2	-4683
				c.1.8.3	-5354
1vzoA	355	8.33e+00			
1ngvA	534	1.27e+01		c.111.1.2	85698
1j5wA	298	1.46e+01		d.104.1.1	71589
1m7vA	363	1.51e+01		d.174.1.1	78748
1v6fA	151	1.68e+01			
1k5cA	335	1.69e+01		b.80.1.3	72076
1s7jA	262	1.75e+01		d.21.1.2	-9424
1nscA	390	1.84e+01	2qwc	b.68.1.1	27591
1d3bA	75	1.86e+01	1d3bA	b.38.1.1	24798
1j1tA	233	2.07e+01		unknown_sccs	-3462
1mp4A	292	2.10e+01		c.68.1.6	79376
1a2zA	220	2.11e+01	1a2zA	c.56.4.1	33794
1pz4A	116	2.16e+01		d.106.1.1	-10780
1f8eA	388	2.59e+01	2qwc	b.68.1.1	59694
1qcxA	359	2.62e+01	1qcxA	b.80.1.2	28028
2ayh	214	2.65e+01	1axkA	b.29.1.2	24172
1nr0A	611	2.74e+01		b.69.4.1	86078
				b.69.4.1	86079
1r2zA	274	3.05e+01		a.156.1.2	-370
				b.113.1.1	-5094
				g.39.1.8	-12748
1l1zA	274	3.07e+01		a.156.1.2	75911
				b.113.1.1	75912
				g.39.1.8	75913
1ckmA	330	3.30e+01	1ckmA	b.40.4.6	25358
				d.142.2.3	41585
1hn0A	1021	3.32e+01		a.102.3.2	83616
				b.18.1.17	83617
				b.24.1.1	83618
				b.30.5.2	83619
1ix9A	205	3.38e+01		a.2.11.1	76899
				d.44.1.1	76900
1i0hA	205	3.40e+01	1avmA	a.2.11.1	15760
				d.44.1.1	38685
1b12A	248	3.63e+01	1b12A	b.87.1.2	28388
1oroA	213	3.74e+01	1opr	c.61.1.1	34093