# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1j2gA	319	1.12e+00			
1bywA	110	3.31e+00	1bywA	d.110.3.6	40912
1phm	310	5.40e+00	1phm	b.121.1.2	59015
				b.121.1.2	59016
1tc1A	220	5.60e+00	1tc1A	c.61.1.1	34083
1vzoA	355	8.10e+00			
1nscA	390	8.22e+00	2qwc	b.68.1.1	27591
1ngvA	534	9.99e+00		c.111.1.2	85698
1v6fA	151	1.09e+01			
1gbg	214	1.10e+01	1axkA	b.29.1.2	24171
1r2zA	274	1.15e+01		a.156.1.2	-370
				b.113.1.1	-5094
				g.39.1.8	-12748
1l1zA	274	1.16e+01		a.156.1.2	75911
				b.113.1.1	75912
				g.39.1.8	75913
2ayh	214	1.18e+01	1axkA	b.29.1.2	24172
1sdwA	314	1.22e+01		b.121.1.2	-3024
				b.121.1.2	-3025
1qcxA	359	1.28e+01	1qcxA	b.80.1.2	28028
1b12A	248	1.30e+01	1b12A	b.87.1.2	28388
1d3bA	75	1.37e+01	1d3bA	b.38.1.1	24798
1uhvA	500	1.43e+01		b.71.1.2	-4683
				c.1.8.3	-5354
1pz4A	116	1.45e+01		d.106.1.1	-10780
1k5cA	335	1.47e+01		b.80.1.3	72076
1vheA	373	1.49e+01		unknown_sccs	-4280
				c.56.5.4	-7890
1nr0A	611	1.50e+01		b.69.4.1	86078
				b.69.4.1	86079
1roaA	122	1.60e+01			
1jssA	224	1.66e+01		d.129.3.2	71844
1hn0A	1021	1.80e+01		a.102.3.2	83616
				b.18.1.17	83617
				b.24.1.1	83618
				b.30.5.2	83619
1bo1A	416	1.84e+01	1bo1A	d.143.1.2	41591
1j1tA	233	2.00e+01		unknown_sccs	-3462
1j5wA	298	2.18e+01		d.104.1.1	71589
1f8eA	388	2.24e+01	2qwc	b.68.1.1	59694
1i50C	318	2.77e+01		d.74.3.1	61756
				d.181.1.1	61757
1ryoA	327	2.91e+01		c.94.1.2	-8708
1xvaA	292	3.16e+01	1xvaA	c.66.1.5	34183
1oroA	213	3.19e+01	1opr	c.61.1.1	34093
1ln1A	214	3.21e+01		d.129.3.2	74038
1euaA	213	3.46e+01	1fwrA	c.1.10.1	29155
1naqA	112	3.55e+01		d.58.5.2	-9984
1qqgA	264	3.63e+01	1qqgA	b.55.1.2	26987
				b.55.1.2	26988
1iqrA	420	3.66e+01		a.99.1.1	66275
				c.28.1.1	66276
1smvA	260	3.73e+01	1smvA	b.121.4.7	23288
8prn	289	3.81e+01	3prn	f.4.3.1	43767
3prn	289	3.97e+01	3prn	f.4.3.1	43761