# List of top-scoring protein chains for t04-100-30-bys hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1sixA	174	2.56e+00		b.85.4.1	-5030
1bywA	110	2.67e+00	1bywA	d.110.3.6	40912
1oroA	213	4.40e+00	1opr	c.61.1.1	34093
1vzoA	355	4.68e+00			
1ngvA	534	4.88e+00		c.111.1.2	85698
1n9lA	109	5.14e+00		d.110.3.6	85468
1mq7A	154	5.24e+00		b.85.4.1	79404
1gbg	214	5.62e+00	1axkA	b.29.1.2	24171
1xvaA	292	7.08e+00	1xvaA	c.66.1.5	34183
1dun	134	8.50e+00	1dun	b.85.4.1	28371
1ptmA	329	8.62e+00		unknown_sccs	-8456
1f7dA	136	1.19e+01	1dun	b.85.4.1	28353
1s0yA	76	1.33e+01		d.80.1.1	-10434
1euaA	213	1.51e+01	1fwrA	c.1.10.1	29155
1k5cA	335	1.57e+01		b.80.1.3	72076
1j2gA	319	1.60e+01			
1qyrA	252	1.84e+01			
2ayh	214	1.85e+01	1axkA	b.29.1.2	24172
1qhoA	686	1.89e+01	1cxlA	b.1.18.2	21844
				b.3.1.1	22513
				b.71.1.1	27751
				c.1.8.1	28738
1fbr	93	1.90e+01	1fbr	g.27.1.1	44948
				g.27.1.1	44949
1i0vA	104	1.94e+01	9rnt	d.1.1.4	36054
1fmtA	314	2.15e+01	1fmtA	b.46.1.1	25758
				c.65.1.1	34174
1kewA	361	2.22e+01		c.2.1.2	68544
1e5kA	201	2.27e+01	1fr9A	c.68.1.8	34578
1opr	213	2.50e+01	1opr	c.61.1.1	34091
1n9pA	207	2.71e+01		b.1.18.16	80343
1bpoA	494	2.88e+01	1bpoA	a.118.1.4	19143
				b.69.6.1	27670
1jssA	224	2.90e+01		d.129.3.2	71844
1e79G	272	3.03e+01	1e79G	c.49.2.1	33158
1q9uA	130	3.07e+01		unknown_sccs	-11025
1hn0A	1021	3.13e+01		a.102.3.2	83616
				b.18.1.17	83617
				b.24.1.1	83618
				b.30.5.2	83619
1kolA	398	3.21e+01		b.35.1.2	77474
				c.2.1.1	77475
1sdwA	314	3.52e+01		b.121.1.2	-3024
				b.121.1.2	-3025
1snzA	344	3.52e+01		b.30.5.4	-3496
1gcyA	527	3.52e+01	1jdc	b.71.1.1	27788
				c.1.8.1	28775
1mrzA	293	3.78e+01		b.43.5.1	-4048
				c.26.1.3	-6616