# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1oxjA	173	3.66e+00		a.60.1.2	87517
				a.118.1.13	87518
1j1xH	114	4.09e+00		b.1.1.1	77063
1uacH	114	4.34e+00		b.1.1.1	-2285
1gy7A	125	5.54e+00		d.17.4.2	70738
1i76A	163	5.57e+00	1hfc	d.92.1.11	61877
1bywA	110	5.65e+00	1bywA	d.110.3.6	40912
1p32A	209	6.11e+00	1p32A	d.25.1.1	38379
1r4xA	275	6.63e+00		unknown_sccs	-2846
				unknown_sccs	-10776
1bt3A	345	6.80e+00	1bt3A	a.86.1.2	18507
1qw9A	502	6.83e+00		b.71.1.2	-4677
				c.1.8.3	-5348
1n9pA	207	7.05e+00		b.1.18.16	80343
1n0xH	230	7.09e+00		b.1.1.1	-2201
				b.1.1.2	-2473
1gqpA	221	9.51e+00		b.18.1.9	70372
1gpqA	135	1.05e+01		d.233.1.1	83295
1ikoP	178	1.24e+01		b.6.1.5	71243
1fthA	122	1.60e+01		d.150.1.2	60028
1k87A	669	1.73e+01		a.176.1.1	77286
				c.1.23.2	77287
1h2cA	140	1.81e+01		b.31.1.1	83462
1v9yA	167	2.08e+01			
1okcA	297	2.11e+01		unknown_sccs	-12339
1euvB	86	2.13e+01	1a5r	d.15.1.1	37598
1e2tA	284	2.63e+01	1e2tA	d.3.1.5	37121
1pyaB	228	2.77e+01	1pyaB		
1m7vA	363	2.86e+01		d.174.1.1	78748
1qvcA	145	2.97e+01	3ullA	b.40.4.3	25284
1i8kB	124	2.98e+01		b.1.1.1	71131
1ep0A	185	3.10e+01	1dzrA	b.82.1.1	28080
1i50C	318	3.10e+01		d.74.3.1	61756
				d.181.1.1	61757
1gcqA	61	3.14e+01	1ckaA	b.34.2.1	60434
1gcyA	527	3.18e+01	1jdc	b.71.1.1	27788
				c.1.8.1	28775
1vddA	228	3.36e+01			
1ckmA	330	3.40e+01	1ckmA	b.40.4.6	25358
				d.142.2.3	41585
1oaqH	121	3.40e+01		b.1.1.1	-2287
1j1bA	420	3.60e+01		d.144.1.7	-11312
1ogaD	215	3.65e+01		b.1.1.1	86990
				b.1.1.2	86991
1hpgA	187	3.65e+01	1qq4A	b.47.1.1	25813
1es6A	296	3.68e+01	1es6A	b.31.1.1	83048
				b.31.1.1	83049
2scpA	174	3.70e+01	2scpA	a.39.1.5	17256
1bf5A	545	3.81e+01	1bg1A	a.47.1.1	17766
				b.2.5.5	22460
				d.93.1.1	40526
1a6wH	120	3.87e+01	1mfa	b.1.1.1	20253
1cqyA	99	3.89e+01	1b9zA	b.3.1.1	22527