# List of top-scoring protein chains for T0255.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1kwbB	292	8.18e-01		d.32.1.3	77557
				d.32.1.3	77558
1kw3B	292	8.85e-01		d.32.1.3	77549
				d.32.1.3	77550
2ljrA	244	5.54e+00	1ljrA	a.45.1.1	17709
				c.47.1.5	33003
1dl5A	317	7.55e+00	1dl5A	c.66.1.7	64720
				d.197.1.1	64721
1ru3A	732	8.94e+00		e.26.1.3	-12021
1t35A	191	8.95e+00		unknown_sccs	-7285
2mobA	138	9.89e+00	1ckv	d.137.1.1	41453
1edzA	320	1.18e+01	1ee9A	c.2.1.7	30287
				c.58.1.2	33935
1mowA	260	1.23e+01		d.95.2.1	79360
				d.95.2.1	79361
1g9zA	152	1.28e+01	1bp7A	d.95.2.1	60408
1n3fA	163	1.30e+01		d.95.2.1	85299
1kllA	130	1.33e+01		d.32.1.2	72720
1kmzA	130	1.35e+01		d.32.1.2	72759
1bucA	383	1.48e+01	3mdeA	a.29.3.1	16590
				e.6.1.1	42851
1ihrA	76	1.63e+01	1ihrA	d.212.1.2	62392
1jc4A	148	1.96e+01	1jc4A	d.32.1.4	62863
1lkdA	297	1.97e+01		d.32.1.3	78059
				d.32.1.3	78060
1iud	380	1.98e+01	4mbp	c.94.1.1	35786
1af5	135	2.08e+01	1bp7A	d.95.2.1	40572
1fwxA	595	2.08e+01		b.6.1.4	60069
				b.69.3.1	60070
1jqdA	292	2.14e+01		c.66.1.19	71787
1jqeA	292	2.17e+01		c.66.1.19	71789
1ycsB	239	2.20e+01	1ycsB	b.34.2.1	24553
				d.211.1.1	19155
1nqdA	122	2.24e+01		b.23.2.1	86025
1nqjA	119	2.24e+01		b.23.2.1	86031
1kqzA	273	2.39e+01		c.1.8.5	68844
1kr1A	273	2.43e+01		c.1.8.5	68846
1v61A	132	2.57e+01			
1mdp1	363	2.57e+01	4mbp		
1kr0A	273	2.70e+01		c.1.8.5	68845
1o7nB	194	2.75e+01		d.17.4.4	81164
1bed	181	2.97e+01	1fvkA	unknown_sccs	-7444
2hvm	273	3.03e+01	1cnv	c.1.8.5	28985
1gkuB	1054	3.11e+01		c.37.1.16	65257
				c.37.1.16	65258
				e.10.1.1	65259
1gl9B	1054	3.15e+01		c.37.1.16	65291
				c.37.1.16	65292
				e.10.1.1	65293
1fukA	165	3.25e+01	1fukA	c.37.1.19	32409
1k3bA	119	3.70e+01		b.61.5.1	72016
1je3A	97	3.70e+01		d.68.3.3	71637
1svxB	395	3.74e+01			
1ob1A	215	3.79e+01		b.1.1.1	86748
				b.1.1.2	86749
1uypA	432	3.80e+01		unknown_sccs	-3480
				unknown_sccs	-4554
1lrtA	376	3.90e+01		c.1.5.1	84685
1gdtA	183	3.95e+01	2rslA	a.4.1.2	16021
				c.53.1.1	33348