# List of top-scoring protein chains for T0255.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kmzA 130 2.04e-08 d.32.1.2 72759 1kllA 130 3.83e-08 d.32.1.2 72720 1f9zA 135 5.62e-04 1qipA d.32.1.1 38484 1nkiA 135 5.09e-03 d.32.1.2 -9544 1npbA 141 7.91e-03 d.32.1.2 -9549 1ecsA 126 8.76e-03 1ecsA d.32.1.2 59407 1kw3B 292 1.18e-02 d.32.1.3 77549 d.32.1.3 77550 1kwbB 292 1.23e-02 d.32.1.3 77557 d.32.1.3 77558 1ewjA 126 1.64e-02 1ecsA d.32.1.2 59526 1mh6A 125 2.31e-02 d.32.1.2 79116 1lkdA 297 2.94e-02 d.32.1.3 78059 d.32.1.3 78060 1bh5A 183 3.27e-02 1qipA d.32.1.1 38476 1qipA 183 6.92e-02 1qipA d.32.1.1 38470 1fukA 165 3.58e-01 1fukA c.37.1.19 32409 1tl2A 236 6.53e-01 1tl2A b.67.1.1 27541 1t47A 381 7.55e-01 1jc4A 148 8.26e-01 1jc4A d.32.1.4 62863 1klxA 138 1.24e+00 a.118.18.1 77440 1j71A 334 1.27e+00 1eagA b.50.1.2 62669 1fuuA 394 1.84e+00 1qvaA c.37.1.19 32412 1f1uA 323 2.11e+00 d.32.1.3 83200 d.32.1.3 83201 2mobA 138 3.76e+00 1ckv d.137.1.1 41453 1na0A 125 4.89e+00 k.38.1.1 85479 1f1xA 322 5.40e+00 d.32.1.3 83208 d.32.1.3 83209 1na3A 91 5.49e+00 k.38.1.1 85481 2alr 324 5.58e+00 1frb c.1.7.1 28679 1mowA 260 5.82e+00 d.95.2.1 79360 d.95.2.1 79361 1mngA 203 5.91e+00 1avmA a.2.11.1 15776 d.44.1.1 38701 1g9zA 152 6.46e+00 1bp7A d.95.2.1 60408 1n3fA 163 6.60e+00 d.95.2.1 85299 1ry2A 663 6.95e+00 e.23.1.1 -12011 1dceB 331 7.56e+00 1dceB a.102.4.3 18872 1ne7A 289 8.25e+00 unknown_sccs -6858 1o12A 376 1.01e+01 b.92.1.5 80758 c.1.9.10 80759 1oywA 523 1.02e+01 unknown_sccs -270 c.37.1.19 -7209 c.37.1.19 -7210 1s72M 194 1.05e+01 1edzA 320 1.06e+01 1ee9A c.2.1.7 30287 c.58.1.2 33935 1r9cA 139 1.08e+01 d.32.1.2 -9557 1uz5A 402 1.09e+01 b.85.6.1 -5029 b.103.1.1 -5069 c.57.1.2 -7902 1lk3A 160 1.11e+01 a.26.1.3 73950 1b47A 304 1.18e+01 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 2cblA 305 1.19e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1bylA 125 1.20e+01 1bylA d.32.1.2 38495 1sq9A 397 1.20e+01 1cdoA 374 1.27e+01 2ohxA b.35.1.2 24747 c.2.1.1 29763 1af5 135 1.27e+01 1bp7A d.95.2.1 40572 1ycsB 239 1.31e+01 1ycsB b.34.2.1 24553 d.211.1.1 19155 1lrtA 376 1.32e+01 c.1.5.1 84685 1avaC 181 1.36e+01 1avaC b.42.4.1 25604 1k3bA 119 1.37e+01 b.61.5.1 72016 1l0aA 192 1.54e+01 b.8.1.1 73389 h.1.2.1 73390 1qtoA 122 1.64e+01 1bylA d.32.1.2 38494 1rf3A 200 1.64e+01 1czyA 168 1.69e+01 1d0aB b.8.1.1 23220 h.1.2.1 45427 1fbvA 388 1.71e+01 2cblA a.39.1.7 17384 a.48.1.1 17778 d.93.1.1 40532 g.44.1.1 45321 1mpyA 307 1.72e+01 1mpyA d.32.1.3 38508 d.32.1.3 38509 1f3vB 171 1.73e+01 1d0aB b.8.1.1 23237 h.1.2.1 45444 1d00A 168 1.79e+01 1d0aB b.8.1.1 23229 h.1.2.1 45436 1dxy 333 1.93e+01 1dxy c.2.1.4 30094 c.23.12.1 31354 1czzA 187 2.07e+01 1d0aB b.8.1.1 23259 h.1.2.1 45466 1ib2A 349 2.22e+01 1ib2A a.118.1.8 62141 1hc1 657 2.24e+01 1lla a.85.1.1 18494 a.86.1.1 18505 b.1.18.3 21870 1qscA 191 2.30e+01 1d0aB b.8.1.1 23250 h.1.2.1 45457 1ca9A 192 2.32e+01 1d0aB b.8.1.1 23244 h.1.2.1 45451 1d5sA 334 2.34e+01 e.1.1.1 42635 1ezxA 335 2.35e+01 1ovaA e.1.1.1 42629 7apiA 347 2.37e+01 1ovaA e.1.1.1 42631 1qmbA 326 2.42e+01 1ovaA e.1.1.1 42633 1cjxA 357 2.46e+01 1cjxA d.32.1.3 38516 d.32.1.3 38517 1ophA 394 2.49e+01 e.1.1.1 -11746 1atu 374 2.51e+01 1ovaA e.1.1.1 42636 1flkA 228 2.54e+01 1d0aB b.8.1.1 23262 h.1.2.1 45469 1o8bA 219 2.57e+01 unknown_sccs 81180 d.58.40.1 81181 1qlpA 394 2.59e+01 1ovaA e.1.1.1 42628 1kct 394 2.60e+01 1ovaA e.1.1.1 42637 1psi 394 2.60e+01 1ovaA e.1.1.1 42634 1iz2A 394 2.68e+01 e.1.1.1 76975 1q1hA 110 2.71e+01 unknown_sccs -262 1ir6A 424 2.79e+01 c.107.1.2 71342 1hp7A 394 2.81e+01 1ovaA e.1.1.1 61117 1frfL 564 2.83e+01 1h2rL e.18.1.1 43300 1e4xL 214 2.88e+01 32c2A b.1.1.1 59240 b.1.1.2 59241 1bfoA 214 3.06e+01 8fabA b.1.1.1 20310 b.1.1.2 21302 1h8eA 510 3.09e+01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1efrA 510 3.09e+01 1skyB a.69.1.1 18299 b.49.1.1 26464 c.37.1.11 32344 1g8pA 350 3.11e+01 1g8pA c.37.1.20 60376 1mqvA 125 3.13e+01 a.24.3.2 79415 1dp4A 435 3.29e+01 1dp4A c.93.1.1 35710 1gv3A 248 3.40e+01 a.2.11.1 70585 d.44.1.1 70586 1t35A 191 3.47e+01 unknown_sccs -7285 1ilk 151 3.61e+01 2ilk a.26.1.3 16886 1k2wA 256 3.71e+01 c.2.1.2 -5824 2ilk 160 3.74e+01 2ilk a.26.1.3 16885 1q67A 231 3.77e+01 unknown_sccs -4373 1mabA 510 3.78e+01 1skyB a.69.1.1 18311 b.49.1.1 26476 c.37.1.11 32356 1dxeA 256 4.00e+01 1dxeA c.1.12.5 29310