# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kllA 130 1.16e-08 d.32.1.2 72720 1f9zA 135 7.85e-07 1qipA d.32.1.1 38484 1fa8A 135 9.40e-07 1qipA d.32.1.1 38486 1ecsA 126 2.65e-05 1ecsA d.32.1.2 59407 1lqpA 135 2.81e-05 d.32.1.2 78151 1nkiA 135 2.81e-05 d.32.1.2 -9544 1kw3B 292 3.54e-04 d.32.1.3 77549 d.32.1.3 77550 1han 297 8.89e-04 1han d.32.1.3 38506 d.32.1.3 38507 1lkdA 297 8.89e-04 d.32.1.3 78059 d.32.1.3 78060 1qipA 183 9.14e-04 1qipA d.32.1.1 38470 1jc4A 148 4.70e-03 1jc4A d.32.1.4 62863 1f1uA 323 6.90e-03 d.32.1.3 83200 d.32.1.3 83201 1r9cA 139 7.68e-03 d.32.1.2 -9557 1qtoA 122 4.58e-02 1bylA d.32.1.2 38494 1bylA 125 1.16e-01 1bylA d.32.1.2 38495 1g9zA 152 1.86e-01 1bp7A d.95.2.1 60408 1f1xA 322 1.92e-01 d.32.1.3 83208 d.32.1.3 83209 1cjxA 357 2.97e-01 1cjxA d.32.1.3 38516 d.32.1.3 38517 1oywA 523 3.48e-01 unknown_sccs -270 c.37.1.19 -7209 c.37.1.19 -7210 1ftrA 296 1.27e+00 1ftrA d.58.33.1 39485 d.58.33.1 39486 1fviA 297 1.79e+00 1fviA b.40.4.6 25364 d.142.2.1 41578 1dynA 125 1.91e+00 1dynA b.55.1.1 26955 1r72A 211 2.00e+00 unknown_sccs -215 unknown_sccs -5981 1uz5A 402 2.53e+00 b.85.6.1 -5029 b.103.1.1 -5069 c.57.1.2 -7902 1o04A 500 2.83e+00 c.82.1.1 86508 1vhyA 257 2.84e+00 b.122.1.2 -5129 c.116.1.5 -6705 1nxzA 246 3.87e+00 b.122.1.2 86391 c.116.1.5 86392 1fiqC 763 4.43e+00 1fiqC d.41.1.1 38588 d.133.1.1 41418 1j5pA 253 4.53e+00 c.2.1.3 83092 d.81.1.3 71577 1v61A 132 5.33e+00 1tl2A 236 6.72e+00 1tl2A b.67.1.1 27541 1i9zA 347 6.75e+00 1i9yA d.151.1.2 62102 1heiA 451 7.06e+00 1heiA c.37.1.14 32463 c.37.1.14 32464 1ckv 141 7.48e+00 1ckv d.137.1.1 41452 1kao 167 8.30e+00 1ctqA c.37.1.8 32014 1eazA 125 8.40e+00 b.55.1.1 70113 1k0eA 453 8.47e+00 d.161.1.1 67938 1qlpA 394 9.01e+00 1ovaA e.1.1.1 42628 1k20A 310 9.37e+00 c.107.1.1 68027 1mkeA 152 9.41e+00 b.55.1.4 79231 1pg4A 652 9.44e+00 e.23.1.1 88067 1ht6A 405 9.46e+00 b.71.1.1 83629 c.1.8.1 83630 1j5yA 187 1.01e+01 a.4.5.1 71592 d.94.2.1 71593 1aisA 182 1.02e+01 1ytbA d.129.1.1 41288 d.129.1.1 41289 1dxeA 256 1.03e+01 1dxeA c.1.12.5 29310 1gkpA 458 1.06e+01 b.92.1.3 70231 c.1.9.6 70232 1o3yA 166 1.14e+01 c.37.1.8 86618 1jkeA 145 1.15e+01 c.110.1.1 66791 1k3bA 119 1.16e+01 b.61.5.1 72016 1pvmA 184 1.22e+01 d.37.1.1 -9612 d.37.1.1 -9613 unknown_sccs -12799 1mkaA 171 1.22e+01 1mkaA d.38.1.2 38543 1nb8A 353 1.34e+01 d.3.1.9 80385 1f6bA 198 1.34e+01 c.37.1.8 64986 1mkiA 330 1.38e+01 e.3.1.2 84994 1fukA 165 1.43e+01 1fukA c.37.1.19 32409 1i9gA 280 1.49e+01 c.66.1.13 62090 1fg7A 356 1.56e+01 1gewA c.67.1.1 59819 1p1lA 102 1.62e+01 d.58.5.2 87695 1l6rA 227 1.86e+01 c.108.1.10 77768 1n6zA 105 1.88e+01 unknown_sccs 85369 1o54A 277 1.91e+01 c.66.1.13 -8095 1mu5A 471 2.01e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1ej1A 190 2.01e+01 1ejhA d.86.1.1 40144 1uc2A 481 2.08e+01 unknown_sccs -11725 1a8b 318 2.09e+01 1avc a.65.1.1 18171 2ran 316 2.09e+01 1avc a.65.1.1 18170 1oo0B 110 2.18e+01 d.58.7.1 87183 1byqA 228 2.20e+01 1yer d.122.1.1 41100 1pba 81 2.23e+01 1pytA d.58.3.1 39067 1hskA 326 2.23e+01 2mbr d.145.1.2 61241 d.146.1.1 61242 3proC 166 2.30e+01 3proC d.52.1.1 38812 d.52.1.1 38813 1btn 106 2.36e+01 1btn b.55.1.1 26952 1lvaA 258 2.37e+01 a.4.5.35 74276 a.4.5.35 74277 a.4.5.35 74278 a.4.5.35 74279 7aatA 401 2.42e+01 1ajsA c.67.1.1 34250 1jj2B 337 2.45e+01 1ffkB b.43.3.2 63086 1s72B 338 2.45e+01 1ryp2 233 2.46e+01 1ryp2 1mngA 203 2.47e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1sjwA 144 2.55e+01 unknown_sccs -9296 1ejdA 419 2.71e+01 1uae d.68.2.2 39576 1rk8A 165 2.72e+01 d.58.7.1 -10018 1r8sA 164 2.73e+01 c.37.1.8 -7082 1mr3F 181 2.74e+01 c.37.1.8 79422 1v9kA 228 2.89e+01 1o1zA 234 2.95e+01 c.1.18.3 86555 1uylA 236 3.10e+01 1v0wA 506 3.10e+01 1mo1A 87 3.11e+01 d.94.1.1 -10640 1jyaA 130 3.13e+01 d.198.1.1 67453 1o0uA 429 3.13e+01 c.118.1.1 80743 1sphA 88 3.17e+01 1ptf d.94.1.1 40544 1lcl 142 3.18e+01 1lcl b.29.1.3 24216 1hdkA 141 3.18e+01 b.29.1.3 65807 1qqgA 264 3.23e+01 1qqgA b.55.1.2 26987 b.55.1.2 26988 1gewA 356 3.31e+01 1gewA c.67.1.1 60470 1j7gA 144 3.34e+01 c.110.1.1 84130 1ptf 88 3.34e+01 1ptf d.94.1.1 40549 1kr4A 125 3.34e+01 d.58.5.2 72889 1uxy 340 3.37e+01 2mbr d.145.1.2 41748 d.146.1.1 41761 1f0iA 504 3.43e+01 1f0iA d.136.1.2 59566 d.136.1.2 59567 1dpgA 485 3.46e+01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1l8bA 190 3.47e+01 d.86.1.1 73683 1d9tA 289 3.54e+01 1deaA 1mx3A 347 3.61e+01 c.2.1.4 79638 c.23.12.1 79639 1mi1A 414 3.77e+01 a.169.1.1 79137 b.55.1.6 79138 1ckeA 227 3.80e+01 1ckeA c.37.1.1 31846 1v97A 1332 3.83e+01 1h3nA 878 3.87e+01 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643