# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kllA 130 2.85e-06 d.32.1.2 72720 1f9zA 135 2.15e-04 1qipA d.32.1.1 38484 1fa8A 135 2.55e-04 1qipA d.32.1.1 38486 1kw3B 292 7.85e-04 d.32.1.3 77549 d.32.1.3 77550 1lkdA 297 1.84e-03 d.32.1.3 78059 d.32.1.3 78060 1han 297 2.78e-03 1han d.32.1.3 38506 d.32.1.3 38507 1ecsA 126 4.38e-03 1ecsA d.32.1.2 59407 1f1uA 323 5.94e-02 d.32.1.3 83200 d.32.1.3 83201 1qipA 183 8.10e-02 1qipA d.32.1.1 38470 1nkiA 135 1.03e-01 d.32.1.2 -9544 1lqpA 135 1.08e-01 d.32.1.2 78151 1jc4A 148 3.72e-01 1jc4A d.32.1.4 62863 1f1xA 322 4.00e-01 d.32.1.3 83208 d.32.1.3 83209 1oywA 523 4.79e-01 unknown_sccs -270 c.37.1.19 -7209 c.37.1.19 -7210 1cjxA 357 1.79e+00 1cjxA d.32.1.3 38516 d.32.1.3 38517 1qtoA 122 2.31e+00 1bylA d.32.1.2 38494 1bylA 125 2.89e+00 1bylA d.32.1.2 38495 2cblA 305 3.29e+00 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1p1lA 102 3.51e+00 d.58.5.2 87695 1tl2A 236 3.54e+00 1tl2A b.67.1.1 27541 1r9cA 139 3.86e+00 d.32.1.2 -9557 1uedA 406 4.00e+00 a.104.1.1 -1459 1na3A 91 4.85e+00 k.38.1.1 85481 1dynA 125 5.05e+00 1dynA b.55.1.1 26955 1g6oA 330 5.44e+00 1g6oA c.37.1.11 32430 1kid 203 6.60e+00 1derA c.8.5.1 30771 1fukA 165 6.87e+00 1fukA c.37.1.19 32409 1jj2Q 154 7.17e+00 1ffkO d.55.1.1 63102 1s72R 155 7.49e+00 1r72A 211 9.28e+00 unknown_sccs -215 unknown_sccs -5981 1cx4A 305 1.14e+01 b.82.3.2 59099 b.82.3.2 59100 1g8pA 350 1.52e+01 1g8pA c.37.1.20 60376 1eokA 290 1.52e+01 1eokA c.1.8.5 28991 1aisA 182 1.55e+01 1ytbA d.129.1.1 41288 d.129.1.1 41289 1qxoA 388 1.76e+01 unknown_sccs -11161 1ollA 188 1.88e+01 b.1.1.4 -2690 b.1.1.4 -2691 1q0pA 223 2.06e+01 c.62.1.1 -7979 1heiA 451 2.16e+01 1heiA c.37.1.14 32463 c.37.1.14 32464 1h32A 261 2.18e+01 a.3.1.8 76618 a.3.1.8 76619 1fjrA 195 2.19e+01 1fjrA b.102.1.1 59855 1v61A 132 2.26e+01 1g9zA 152 2.89e+01 1bp7A d.95.2.1 60408 1aky 221 2.90e+01 1zin c.37.1.1 31896 g.41.2.1 45197 1fg7A 356 2.93e+01 1gewA c.67.1.1 59819 1uz5A 402 2.98e+01 b.85.6.1 -5029 b.103.1.1 -5069 c.57.1.2 -7902 1qlpA 394 3.02e+01 1ovaA e.1.1.1 42628 1riqA 465 3.03e+01 unknown_sccs -1295 d.104.1.1 -10769 1qqgA 264 3.09e+01 1qqgA b.55.1.2 26987 b.55.1.2 26988 1lvaA 258 3.16e+01 a.4.5.35 74276 a.4.5.35 74277 a.4.5.35 74278 a.4.5.35 74279 1ko7A 314 3.23e+01 c.98.2.1 72797 c.91.1.2 72798 1o54A 277 3.26e+01 c.66.1.13 -8095 1em8A 147 3.62e+01 unknown_sccs -7272 1mngA 203 3.79e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1j5pA 253 3.97e+01 c.2.1.3 83092 d.81.1.3 71577 1go3F 107 4.00e+01 a.60.8.2 65407