PFRMAT RR TARGET T0255 AUTHOR 4204-4258-2837 REMARK From group SAM-TO4-hand under the direction of REMARK Kevin Karplus. REMARK Project by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The number of predictions is limited to .5*sequence_length REMARK or to a limited set of high scoring pairs. REMARK METHOD The predictor is an artificial neural network METHOD using 280 inputs. METHOD Input includes separation and sequence length, corrected METHOD mutual information between columns (M. Cline) and METHOD an e-value measure of correlation between columns (K Karplus) METHOD NN: /projects/compbio/experiments/protein-predict/casp6/networks/NN280-240n300.net.28 METHOD Other inputs are from alignments and METHOD secondary predictions from SAM-t2k and SAM-t04 of METHOD University of California, Santa Cruz MODEL 1 MNSKNTICLWYDSAALEAATFYAETFPDSAVLAVHRAPGDYPSGKEGDVL TVEFRVMGIPCLGLNGGPAFRHSEAFSFQVATDDQAETDRLWNAIVDNGG EESACGWCRDKWGISWQITPRVLSEAIASPDRAAARRAFEAMMTMGRIDI ATIEKAFKG 107 117 0 8 0.71485 10 117 0 8 0.6154 10 107 0 8 0.59075 11 114 0 8 0.5865 11 63 0 8 0.5797 92 107 0 8 0.5338 10 115 0 8 0.5287 103 120 0 8 0.5236 92 105 0 8 0.5236 54 107 0 8 0.50405 10 54 0 8 0.49725 105 123 0 8 0.4896 54 64 0 8 0.48705 104 120 0 8 0.4641 63 95 0 8 0.45645 70 117 0 8 0.45135 61 88 0 8 0.45135 19 52 0 8 0.44115 107 120 0 8 0.43945 55 112 0 8 0.4369 74 100 0 8 0.4267 54 117 0 8 0.4233 85 107 0 8 0.41055 51 64 0 8 0.40375 53 64 0 8 0.39865 85 120 0 8 0.3961 54 105 0 8 0.37825 29 85 0 8 0.3757 11 107 0 8 0.3757 51 62 0 8 0.37315 10 64 0 8 0.3655 85 104 0 8 0.36295 10 92 0 8 0.36295 95 117 0 8 0.3604 75 117 0 8 0.3604 76 91 0 8 0.3502 105 119 0 8 0.3434 85 105 0 8 0.34085 92 117 0 8 0.33575 111 120 0 8 0.3332 63 91 0 8 0.3332 106 115 0 8 0.3281 10 67 0 8 0.3281 64 105 0 8 0.3264 28 74 0 8 0.3264 25 95 0 8 0.3264 10 53 0 8 0.3264 102 121 0 8 0.3213 98 111 0 8 0.3213 75 107 0 8 0.3145 50 62 0 8 0.31195 10 63 0 8 0.31195 74 112 0 8 0.3043 63 76 0 8 0.3026 105 120 0 8 0.2975 10 77 0 8 0.2975 67 107 0 8 0.29495 59 107 0 8 0.29495 10 91 0 8 0.29325 105 117 0 8 0.2907 107 119 0 8 0.28815 67 120 0 8 0.28815 10 65 0 8 0.28645 10 70 0 8 0.2839 28 57 0 8 0.28135 53 70 0 8 0.27965 10 75 0 8 0.2771 55 75 0 8 0.27455 28 101 0 8 0.27455 70 115 0 8 0.2703 105 118 0 8 0.2686 79 117 0 8 0.2686 74 120 0 8 0.26605 59 117 0 8 0.2618 8 117 0 8 0.2618 61 82 0 8 0.25925 95 114 0 8 0.25755 55 117 0 8 0.255 27 75 0 8 0.255 79 120 0 8 0.2533 55 82 0 8 0.2533 53 92 0 8 0.2533 11 120 0 8 0.2533 55 72 0 8 0.25075 53 107 0 8 0.25075 51 92 0 8 0.25075 28 75 0 8 0.25075 27 102 0 8 0.25075 107 123 0 8 0.24905 100 120 0 8 0.24905 95 108 0 8 0.24905 77 91 0 8 0.24905 51 118 0 8 0.24905 29 107 0 8 0.24905 101 120 0 8 0.2465 57 104 0 8 0.2465 48 65 0 8 0.2465 10 19 0 8 0.2465 102 120 0 8 0.2448 79 105 0 8 0.2448 63 75 0 8 0.2448 19 51 0 8 0.2448 82 120 0 8 0.24225 75 115 0 8 0.24225 72 107 0 8 0.24225 41 53 0 8 0.24225 89 104 0 8 0.24055 88 105 0 8 0.24055 63 77 0 8 0.238 49 112 0 8 0.238 19 92 0 8 0.238 79 95 0 8 0.2363 15 115 0 8 0.2363 8 105 0 8 0.2363 11 88 0 8 0.2346 95 105 0 8 0.23205 75 120 0 8 0.23205 55 70 0 8 0.23205 10 66 0 8 0.23205 29 74 0 8 0.2278 10 105 0 8 0.2278 59 72 0 8 0.2244 28 120 0 8 0.2244 8 64 0 8 0.2244 64 75 0 8 0.22185 53 67 0 8 0.22185 29 75 0 8 0.22185 65 112 0 8 0.22015 29 120 0 8 0.22015 27 74 0 8 0.22015 8 107 0 8 0.21845 105 115 0 8 0.21675 12 111 0 8 0.21675 109 120 0 8 0.2142 90 102 0 8 0.2142 74 102 0 8 0.2142 108 123 0 8 0.2125 64 95 0 8 0.2125 61 112 0 8 0.2125 92 114 0 8 0.2108 91 107 0 8 0.2108 74 107 0 8 0.2108 64 115 0 8 0.2091 10 72 0 8 0.2091 54 70 0 8 0.20655 5 95 0 8 0.20655 85 109 0 8 0.20485 64 120 0 8 0.20485 64 117 0 8 0.20485 79 92 0 8 0.20315 5 25 0 8 0.20315 62 118 0 8 0.20145 29 119 0 8 0.20145 30 47 0 8 0.19975 11 112 0 8 0.19975 23 107 0 8 0.1972 10 120 0 8 0.1972 65 117 0 8 0.1955 61 114 0 8 0.1955 18 114 0 8 0.1955 10 41 0 8 0.1955 74 101 0 8 0.1921 65 75 0 8 0.1921 11 59 0 8 0.1921 67 115 0 8 0.1904 24 107 0 8 0.1904 10 82 0 8 0.1904 8 119 0 8 0.1904 8 92 0 8 0.1904 105 114 0 8 0.1887 28 111 0 8 0.1887 92 120 0 8 0.187 91 120 0 8 0.187 70 107 0 8 0.187 53 111 0 8 0.187 29 72 0 8 0.187 103 119 0 8 0.1853 60 70 0 8 0.1853 55 88 0 8 0.1853 41 55 0 8 0.1853 11 70 0 8 0.1853 72 117 0 8 0.1836 64 92 0 8 0.1836 53 66 0 8 0.1836 37 59 0 8 0.1836 75 105 0 8 0.1819 16 55 0 8 0.1819 67 111 0 8 0.1802 55 107 0 8 0.1802 10 80 0 8 0.1802 54 120 0 8 0.1785 37 55 0 8 0.1785 28 107 0 8 0.1785 79 107 0 8 0.1768 27 101 0 8 0.1768 26 75 0 8 0.1751 52 94 0 8 0.1734 8 75 0 8 0.1734 41 59 0 8 0.1717 56 75 0 8 0.17 29 105 0 8 0.17 END