Best Alignments for T0254

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1hfoA/T0254-1hfoA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1hfoA/T0254-1hfoA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.2228e-025.6860e-04 d.80.1.3
1dptA/T0254-1dptA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1dptA/T0254-1dptA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.8701e-011.1993e-02 1dptA d.80.1.3
1gyxA/T0254-1gyxA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1gyxA/T0254-1gyxA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.0578e+009.6657e-01 d.80.1.1
1fv1B/1iakB-T0254-fssp-local-adpstyle5.a2m 1fv1B/1iakB-T0254-fssp-local-adpstyle5.al 2.9981e+001.0921e+00 1iakB d.19.1.1
b.1.1.2
1r3fA/T0254-1r3fA-t2k-local-adpstyle5.a2m 1r3fA/T0254-1r3fA-t2k-local-adpstyle5.al 3.7573e+003.9125e+00 b.122.1.1
unknown_sccs
1d5zB/1iakB-T0254-fssp-local-adpstyle5.a2m 1d5zB/1iakB-T0254-fssp-local-adpstyle5.al 4.0046e+001.3900e+00 1iakB d.19.1.1
b.1.1.2
1otgA/T0254-1otgA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1otgA/T0254-1otgA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.1742e+005.1661e-01 1otgA d.80.1.2
2gacB/1apyB-T0254-fssp-local-adpstyle5.a2m 2gacB/1apyB-T0254-fssp-local-adpstyle5.al 4.5883e+001.7817e+00 1apyB
2gawB/1apyB-T0254-fssp-local-adpstyle5.a2m 2gawB/1apyB-T0254-fssp-local-adpstyle5.al 4.5883e+001.7817e+00 1apyB

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001