# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hfoA 113 1.98e-01 d.80.1.3 61006 1cqqA 180 8.01e-01 1cqqA b.47.1.4 26422 1q72L 218 1.51e+00 b.1.1.1 -2071 b.1.1.2 -2347 1iv3A 152 1.66e+00 d.79.5.1 76828 1k20A 310 1.88e+00 c.107.1.1 68027 1mjc 69 2.31e+00 1mjc b.40.4.5 25319 1d5mB 192 3.37e+00 1iakB b.1.1.2 21618 d.19.1.1 38192 3mefA 69 3.94e+00 1mjc b.40.4.5 25320 2lhb 149 4.69e+00 2fal a.1.1.2 15597 2ptd 298 5.04e+00 2plc c.1.18.2 29605 1mfiA 114 5.50e+00 1dptA d.80.1.3 39856 1fjgJ 105 6.05e+00 1fjfJ d.58.15.1 39330 1ds6B 180 6.08e+00 1rhoA b.1.18.8 21898 9gafA 295 6.22e+00 1apyA d.153.1.5 42008 1spgB 147 6.39e+00 1cg5B a.1.1.2 15588 1fadA 99 6.63e+00 1fadA a.77.1.2 18428 1mo7A 213 6.85e+00 d.220.1.1 85028 1dlhB 188 7.28e+00 1iakB b.1.1.2 21598 d.19.1.1 38172 1mjuL 219 7.31e+00 b.1.1.1 -2083 b.1.1.2 -2360 1nlbL 220 7.74e+00 b.1.1.1 80623 b.1.1.2 80624 1p4kA 295 7.96e+00 d.153.1.5 87772 1m4jA 142 8.77e+00 d.109.1.2 78602 1di0A 158 8.78e+00 1di0A c.16.1.1 30957 1l1nA 183 9.18e+00 b.47.1.4 73476 1uvqB 198 1.02e+01 b.1.1.2 -2659 d.19.1.1 -9348 1bpb 248 1.06e+01 1bpyA a.60.12.1 75811 d.218.1.2 75812 1cg5A 141 1.21e+01 1abwA a.1.1.2 15406 1uanA 227 1.34e+01 unknown_sccs -8129 1sviA 195 1.46e+01 1dhn 121 1.50e+01 1dhn d.96.1.3 40663 1ibyA 112 1.58e+01 1ibzA b.6.1.4 62233 1k5wA 152 1.59e+01 b.7.1.2 68212 1qb7A 236 1.63e+01 1qb7A c.61.1.1 34087 1i74A 309 1.67e+01 1i74A c.107.1.1 61867 1gd0A 122 1.75e+01 1dptA d.80.1.3 39834 1h9mA 145 1.78e+01 1h9jA b.40.6.2 60833 b.40.6.2 60834 1q9rA 219 1.80e+01 b.1.1.1 -2109 b.1.1.2 -2375 1b3uA 588 1.81e+01 1b3uA a.118.1.2 19135 1qysA 106 1.85e+01 unknown_sccs -13432 1o6dA 163 1.86e+01 c.116.1.3 -6689 1gqiA 708 1.94e+01 c.1.8.10 76279 d.92.2.2 76280 1npdA 288 2.06e+01 c.2.1.7 80681 c.58.1.5 80682 1sctB 151 2.08e+01 3sdhA a.1.1.2 15003 1sqhA 312 2.10e+01 unknown_sccs -10812 1i37A 260 2.17e+01 1a28A a.123.1.1 61583 1o6uA 403 2.18e+01 a.5.3.1 -366 unknown_sccs -3048 c.13.1.1 -6221 1nrhX 472 2.22e+01 c.2.1.5 -5944 d.162.1.2 -11511 1i1gA 141 2.24e+01 a.4.5.32 65982 d.58.4.2 65983 1nrjA 158 2.30e+01 d.110.4.4 86124 1jgtA 513 2.32e+01 c.26.2.1 66684 d.153.1.1 66685 1eluB 390 2.36e+01 1elqA c.67.1.3 34435 1hyxL 216 2.43e+01 8fabA b.1.1.1 20166 b.1.1.2 21190 1eluA 390 2.50e+01 1elqA c.67.1.3 34434 1elqA 390 2.55e+01 1elqA c.67.1.3 34436 1mut 129 2.61e+01 1tum d.113.1.1 40921 1nom 248 2.62e+01 1bpyA a.60.12.1 75929 d.218.1.2 75930 1ajw 145 2.70e+01 1rhoA b.1.18.8 21905 1jguH 217 2.71e+01 b.1.1.1 66688 b.1.1.2 66689 1vi2A 300 2.75e+01 c.2.1.7 -5960 c.58.1.5 -6366 1wab 232 2.78e+01 1wab c.23.10.3 31341 1i60A 278 2.85e+01 c.1.15.4 71118 1mcpL 220 3.06e+01 8fabA b.1.1.1 19858 b.1.1.2 20958 1fhuA 320 3.17e+01 1fhuA c.1.11.2 29234 d.54.1.1 38878 1ru3A 732 3.25e+01 e.26.1.3 -12021 1cwpA 190 3.31e+01 1cwpA b.121.4.5 23305 1rztA 331 3.41e+01 a.60.6.1 -1023 a.60.12.1 -1030 d.218.1.2 -9807 1qapA 296 3.57e+01 1qpoA c.1.17.1 29559 d.41.2.1 38595 1ffkI 194 3.67e+01 1ffkI d.12.1.2 37494 1es9A 232 3.71e+01 1wab c.23.10.3 31340 1otgA 125 3.85e+01 1otgA d.80.1.2 39831 1bx2B 191 3.96e+01 1iakB b.1.1.2 21610 d.19.1.1 38184 1ed1A 135 4.00e+01 1hiwA a.61.1.1 18130