# TARGET T0254 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0254.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.1529 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.029 0.004 0.003 0.002 0.142 0.821 2 P 0.177 0.005 0.007 0.004 0.154 0.652 3 H 0.612 0.015 0.010 0.005 0.072 0.285 4 L 0.860 0.008 0.006 0.007 0.030 0.090 5 R 0.890 0.003 0.002 0.008 0.020 0.078 6 F 0.811 0.003 0.005 0.028 0.029 0.125 7 R 0.642 0.004 0.011 0.068 0.071 0.204 8 A 0.415 0.007 0.045 0.241 0.112 0.179 9 V 0.264 0.017 0.072 0.315 0.148 0.184 10 E 0.180 0.013 0.053 0.574 0.059 0.121 11 A 0.033 0.001 0.041 0.860 0.033 0.032 12 H 0.017 0.001 0.034 0.903 0.028 0.018 13 I 0.007 0.001 0.028 0.940 0.017 0.006 14 V 0.005 0.001 0.030 0.946 0.013 0.005 15 E 0.003 0.001 0.080 0.892 0.021 0.003 16 S 0.003 0.001 0.036 0.932 0.019 0.009 17 L 0.001 0.002 0.017 0.881 0.027 0.071 18 V 0.002 0.004 0.011 0.510 0.095 0.377 19 P 0.001 0.001 0.045 0.930 0.017 0.007 20 T 0.001 0.001 0.071 0.898 0.024 0.007 21 L 0.001 0.001 0.022 0.969 0.006 0.002 22 L 0.001 0.001 0.007 0.984 0.005 0.004 23 N 0.001 0.001 0.007 0.982 0.006 0.004 24 E 0.001 0.001 0.011 0.962 0.015 0.010 25 L 0.001 0.001 0.006 0.980 0.007 0.006 26 S 0.002 0.001 0.018 0.951 0.019 0.009 27 S 0.001 0.001 0.025 0.934 0.025 0.014 28 L 0.006 0.001 0.045 0.848 0.048 0.052 29 L 0.011 0.002 0.030 0.853 0.051 0.052 30 S 0.023 0.004 0.026 0.646 0.115 0.186 31 T 0.020 0.006 0.020 0.175 0.198 0.581 32 A 0.029 0.010 0.050 0.046 0.374 0.490 33 R 0.028 0.005 0.274 0.029 0.484 0.181 34 N 0.053 0.002 0.250 0.019 0.516 0.160 35 A 0.507 0.006 0.077 0.017 0.253 0.139 36 F 0.869 0.005 0.002 0.006 0.035 0.084 37 T 0.960 0.002 0.001 0.002 0.010 0.026 38 F 0.981 0.001 0.001 0.002 0.003 0.013 39 E 0.967 0.001 0.001 0.003 0.006 0.023 40 L 0.927 0.002 0.001 0.002 0.034 0.034 41 I 0.778 0.005 0.003 0.003 0.135 0.076 42 N 0.398 0.007 0.010 0.008 0.419 0.158 43 T 0.352 0.011 0.013 0.012 0.450 0.163 44 Q 0.547 0.013 0.026 0.017 0.210 0.186 45 Y 0.752 0.024 0.033 0.020 0.093 0.078 46 F 0.668 0.045 0.023 0.028 0.162 0.074 47 A 0.495 0.021 0.026 0.020 0.369 0.068 48 E 0.180 0.008 0.019 0.015 0.654 0.124 49 G 0.088 0.006 0.018 0.006 0.720 0.163 50 G 0.217 0.013 0.010 0.002 0.413 0.346 51 V 0.518 0.050 0.004 0.001 0.087 0.340 52 Y 0.642 0.010 0.003 0.001 0.087 0.258 53 P 0.781 0.001 0.002 0.001 0.050 0.165 54 M 0.976 0.002 0.001 0.001 0.005 0.017 55 V 0.993 0.001 0.001 0.001 0.002 0.004 56 E 0.995 0.001 0.001 0.001 0.001 0.003 57 V 0.986 0.001 0.001 0.001 0.003 0.008 58 L 0.935 0.001 0.003 0.004 0.019 0.039 59 W 0.825 0.003 0.009 0.008 0.059 0.095 60 F 0.379 0.017 0.019 0.013 0.202 0.370 61 G 0.134 0.010 0.020 0.016 0.350 0.472 62 R 0.023 0.008 0.095 0.127 0.433 0.314 63 E 0.016 0.007 0.048 0.214 0.344 0.371 64 Q 0.003 0.002 0.085 0.742 0.127 0.042 65 Q 0.002 0.001 0.020 0.923 0.032 0.021 66 T 0.001 0.001 0.006 0.976 0.007 0.009 67 Q 0.001 0.001 0.001 0.996 0.001 0.001 68 D 0.001 0.001 0.001 0.998 0.001 0.001 69 Q 0.001 0.001 0.001 0.999 0.001 0.001 70 I 0.001 0.001 0.001 0.999 0.001 0.001 71 A 0.001 0.001 0.001 0.999 0.001 0.001 72 Q 0.001 0.001 0.001 0.999 0.001 0.001 73 V 0.001 0.001 0.002 0.997 0.001 0.001 74 I 0.001 0.001 0.001 0.996 0.001 0.002 75 T 0.001 0.001 0.001 0.995 0.001 0.003 76 D 0.001 0.001 0.001 0.999 0.001 0.001 77 Q 0.001 0.001 0.001 0.999 0.001 0.001 78 I 0.001 0.001 0.001 0.999 0.001 0.001 79 R 0.001 0.001 0.001 0.998 0.001 0.001 80 Q 0.001 0.001 0.001 0.997 0.001 0.001 81 L 0.001 0.001 0.002 0.985 0.005 0.007 82 L 0.001 0.002 0.005 0.919 0.028 0.045 83 G 0.006 0.005 0.012 0.143 0.735 0.099 84 A 0.005 0.001 0.041 0.025 0.806 0.122 85 D 0.020 0.005 0.062 0.007 0.765 0.142 86 S 0.133 0.019 0.043 0.002 0.681 0.123 87 H 0.306 0.004 0.004 0.001 0.118 0.567 88 L 0.957 0.003 0.001 0.001 0.008 0.031 89 A 0.990 0.001 0.001 0.001 0.002 0.008 90 V 0.998 0.001 0.001 0.001 0.001 0.001 91 V 0.998 0.001 0.001 0.001 0.001 0.001 92 F 0.996 0.001 0.001 0.001 0.001 0.003 93 I 0.990 0.001 0.001 0.001 0.002 0.007 94 P 0.934 0.001 0.001 0.002 0.016 0.047 95 L 0.665 0.009 0.003 0.004 0.096 0.224 96 Q 0.293 0.010 0.015 0.006 0.462 0.214 97 R 0.069 0.003 0.225 0.040 0.559 0.103 98 T 0.086 0.003 0.279 0.070 0.479 0.083 99 A 0.424 0.009 0.211 0.058 0.246 0.051 100 Y 0.680 0.027 0.033 0.057 0.096 0.107 101 Y 0.613 0.053 0.017 0.046 0.252 0.019 102 L 0.420 0.015 0.011 0.044 0.473 0.038 103 D 0.096 0.002 0.012 0.030 0.796 0.063 104 G 0.209 0.016 0.007 0.008 0.641 0.119 105 Q 0.385 0.044 0.006 0.017 0.156 0.391 106 H 0.381 0.097 0.005 0.015 0.115 0.387 107 F 0.101 0.009 0.002 0.006 0.098 0.784