(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0254 AAF93879, Vibrio cholerae O1 biovar eltor str. N16961
    • gi|45533985|ref|ZP_00184541.1|_1:60 hypothetical protein Mflo007001 [Mesoplasma florum L1]
                 10        20        30        40              50      
                 |         |         |         |               |      
   1 ...MPHLRFRAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINT.Q.YFA.EG...GV...YP
   2 ...MPHLRFRAVEPQAVQALSKPLTDELQPLMNSPREDFTFEYIYT.T.FFS.EG...EVspaYP
   3 ...MPHLKIRGIEKNLIVENSKEIIDELTKIIGCDRNWFTIEHQNT.E.YIF.DG...KIvdgYT
   4 ...MPHLKIRGIEKNLIVENSKEIIDELTKIIGCDRNWFTIEHQNT.K.YIF.DG...KIvdgYT
   5 ...MPHVVFRGITTEQLKHISKPLVEELAEICECGTDNFTLELPSS.T.FVF.NGeeiEA...FP
   6 ...MPHIVFRGITTEQLKHISKPLVEELAEICECGTDNFTLELPSS.T.FVF.NGeeiEA...FP
   7 ...MPHLRFRAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINT.Q.YFA.EG...GV...YP
   8 gnnMPHVVFRGITTEQLKSISKPLVEELADICECGTDNFTLELPSS.T.FVF.NGeeiEA...FP
   9 gvfMPHLRFRAVEFDTVKVLSTALVDDLQPLMACPREDITLEHIPA.S.FIF.DG...EVsdaYP
  10 lphMPHIRMRAVKKEHVQLLSDSLAKELAPAMKTPVDNFTFELVQT.Q.FFS.GGqqtDS...YP
  11 ...MPHISMRGLPQAVVAELSQTLLQSLAAICKGKAESFTLDWIPS.I.SYR.NG...RIdqrFV
  12 ...MPILKFNGTTEEKVKEYSKKI-NEIADLIVSKPEAILMMVNNNnI.FVAkNT...NK...RI
  13 ...MPIIKFSGLEKEQVNQFSKNI-QTIAELVKADPKNIFVIWENS.EvFVT.EP...ST...KP
  14 gsiMPYLRFKGFDEGFLRKLGPLVVEEFSRVAVVPPEVVKIELLN-.-.-IV.QI...TA...TP
  15 ...MPILKFNGTTEEKVKEYSKKI-NEIADLIVSKPEAILMMVNNNnI.FVAkNT...NK...RI


             60        70        80         90       100           
             |         |         |          |         |           
   1 .M.VEVLWFGREQQTQDQIAQVITDQIRQLL.GADSHLAVVFIPLQRTAYYLDGQHF....
   2 .F.VEVLWFDRGQETQDKVAKVITQQVRGVV.GEDIDVAVIFSALSPNAYYDNGEHY....
   3 .F.VELYWFARDEKIKKEVADFLTKFIKK-I.NNNKDCCIIFFTLTGNNYCDNGEFF....
   4 .F.VELYWFARDEKIKKEVADFLTKFIKK-I.NNNKDCCIIFFTLTGDNYCDNGEFF....
   5 .L.IEVKWFERGQEIRDRFAKAITTYVMD-F.GL-PEVEVVFTVFTESAYYINGKHCas..
   6 .L.IEVKWFERGQEIRNRFAKAITTYVMD-F.GL-PEVEVVFTVFTESAYYINGKHCas..
   7 .M.VEVLWFGREQQTQDQIAQVITDQIRQLL.GADSHLAVVFIPLQRTAYYLDGQHF....
   8 .L.IEVKWFKRGQEIRDRFAKAITTYVMD-F.GL-PEVEVVFTVFTESAYYINGKHCas..
   9 .F.VEVLWFDRGQVIQDQVANIITLAIRSALqDNEQDVAVIFSSLTPSAYYDNGEHY....
  10 .F.IEVLWFARSQEVQDECASIITRQIKSIA.DY-EDVVIVFQVLAKEAYYENGIHF....
  11 .Q.IELLWFPVDPDIHLKVEQTIRLAVTEAY.PELTQIAVMFLSLTPSASYRGGQHV....
  12 .Y.VEVDWLKRSEESRVLLVQHLTNFF---G.NQGVNVSVKFTEINNDLYVNNEKRG....
  13 iY.VTVEWMARPDK-EQLLADFIVDYFKD--.-YSQKVWVFFTDVNSKLYAHRKKLG....
  14 .RsLEIFIFPRDQKKHDAIAATLAG-ILGRY.GYD-DVHIFFVLLSPSLYYKEGIPLnnv.
  15 .Y.VEVDW-----------------------.-------------------------....