# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hfoA 113 2.69e-03 d.80.1.3 61006 1dptA 117 1.80e-02 1dptA d.80.1.3 39862 1gyxA 76 9.56e-02 d.80.1.1 76387 1p4kA 295 2.30e-01 d.153.1.5 87772 9gafA 295 2.34e-01 1apyA d.153.1.5 42008 1gd0A 122 2.77e-01 1dptA d.80.1.3 39834 1s0yA 76 5.08e-01 d.80.1.1 -10434 1iv3A 152 5.65e-01 d.79.5.1 76828 1ow1A 195 1.31e+00 unknown_sccs -4422 1otfA 62 1.41e+00 1otfA d.80.1.1 39820 1s0aA 429 2.01e+00 c.67.1.4 -8201 1mwwA 128 2.42e+00 unknown_sccs -10451 1flcA 432 4.61e+00 1flcA b.19.1.3 23837 c.23.10.2 31337 1qj5A 429 6.11e+00 1dtyA c.67.1.4 34493 1g8aA 227 6.55e+00 c.66.1.3 -8049 1ex2A 189 6.93e+00 1ex2A c.51.4.2 33225 1i1qA 520 8.50e+00 1qdlA d.161.1.1 61543 1m0dA 138 8.71e+00 c.52.1.17 74354 1cwpA 190 1.17e+01 1cwpA b.121.4.5 23305 1otgA 125 1.17e+01 1otgA d.80.1.2 39831 1fzrA 138 1.18e+01 1fzrA c.52.1.17 33336 1dmhA 311 1.19e+01 1dmhA b.3.6.1 22633 1pwhA 327 1.19e+01 c.79.1.1 -8524 1que 303 1.21e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1go2A 304 1.22e+01 b.43.4.2 76243 c.25.1.1 76244 1i60A 278 1.27e+01 c.1.15.4 71118 1sviA 195 1.30e+01 1dbfA 127 1.32e+01 2chsA d.79.1.2 39761 1ui0A 205 1.33e+01 c.18.1.2 -6328 1jkxA 212 1.49e+01 c.65.1.1 66813 1gt91 357 1.50e+01 1i7kA 179 1.54e+01 1u9aA d.20.1.1 61889 1nvmB 312 1.67e+01 c.2.1.3 86251 d.81.1.1 86252 1mo0A 275 1.71e+01 c.1.1.1 79329 1e25A 282 1.73e+01 1e25A e.3.1.1 42731 1b6rA 355 1.75e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1cv2A 296 1.80e+01 1bn6A c.69.1.8 34680 1lshB 319 1.87e+01 f.7.1.1 74245 1bjnA 360 1.89e+01 1bjnA c.67.1.4 34469 1ogiA 303 1.93e+01 b.43.4.2 -4042 c.25.1.1 -6587 1cqqA 180 1.95e+01 1cqqA b.47.1.4 26422 1jrrA 382 1.96e+01 e.1.1.1 63256 1on3A 523 1.99e+01 c.14.1.4 87107 c.14.1.4 87108 1r0pA 312 2.05e+01 d.144.1.7 -11377 1iyhA 198 2.06e+01 a.45.1.1 83790 c.47.1.5 83791 1j5yA 187 2.07e+01 a.4.5.1 71592 d.94.2.1 71593 1owfA 99 2.15e+01 a.55.1.1 87487 1ukuA 102 2.19e+01 d.58.5.2 -9992 1k20A 310 2.19e+01 c.107.1.1 68027 1vi2A 300 2.25e+01 c.2.1.7 -5960 c.58.1.5 -6366 1k6dA 220 2.28e+01 unknown_sccs 72082 1rpxA 230 2.33e+01 1rpxA c.1.2.2 28536 1rpnA 335 2.35e+01 c.2.1.2 -5759 1k1xA 659 2.38e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1ev0A 58 2.46e+01 1ev0A d.71.1.1 39594 1adjA 421 2.47e+01 1adjA c.51.1.1 33188 d.104.1.1 40737 1fjgJ 105 2.49e+01 1fjfJ d.58.15.1 39330 1uw4A 91 2.49e+01 unknown_sccs -10038 1rp4A 389 2.50e+01 1mj5A 302 2.50e+01 c.69.1.8 -8326 1i58A 189 2.58e+01 1b3qA d.122.1.3 61773 1elqA 390 2.63e+01 1elqA c.67.1.3 34436 1eluA 390 2.63e+01 1elqA c.67.1.3 34434 1k6xA 352 2.70e+01 c.2.1.2 68238 1nw1A 429 2.84e+01 d.144.1.8 86286 1m6jA 261 2.85e+01 c.1.1.1 78693 1nnlA 225 2.89e+01 c.108.1.4 85906 1p5jA 372 2.97e+01 1hqz1 141 2.98e+01 1em2A 229 3.00e+01 1em2A d.129.3.2 41321 1iz5A 249 3.03e+01 d.131.1.2 83834 d.131.1.2 83835 1a99A 344 3.16e+01 1pot c.94.1.1 35812 1qlmA 316 3.16e+01 1qlmA d.147.1.1 41765 1p3wA 404 3.23e+01 c.67.1.3 87752 1vi4A 174 3.25e+01 c.8.7.1 -6073 1eceA 358 3.26e+01 1eceA c.1.8.3 28813 1m4jA 142 3.38e+01 d.109.1.2 78602 1ftrA 296 3.39e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1qysA 106 3.54e+01 unknown_sccs -13432 1g291 372 3.55e+01 1g291 1bu6O 501 3.56e+01 1glcG c.55.1.4 33499 c.55.1.4 33500 1kz1A 159 3.57e+01 c.16.1.1 73318 1vjgA 218 3.61e+01 unknown_sccs -6447 1b5tA 275 3.66e+01 1b5tA c.1.23.1 29676 1ir3A 306 3.89e+01 1fmk d.144.1.7 41702 1sdoA 203 3.97e+01 unknown_sccs -7558