# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hfoA 113 6.44e-05 d.80.1.3 61006 1dptA 117 2.81e-03 1dptA d.80.1.3 39862 1gd0A 122 4.40e-03 1dptA d.80.1.3 39834 1gyxA 76 4.89e-03 d.80.1.1 76387 1mwwA 128 1.73e-02 unknown_sccs -10451 1otfA 62 3.65e-02 1otfA d.80.1.1 39820 9gafA 295 5.05e-02 1apyA d.153.1.5 42008 1p4kA 295 5.23e-02 d.153.1.5 87772 1s0yA 76 8.80e-02 d.80.1.1 -10434 1otgA 125 3.03e-01 1otgA d.80.1.2 39831 1ow1A 195 5.63e-01 unknown_sccs -4422 1pwhA 327 5.93e-01 c.79.1.1 -8524 1m0dA 138 9.55e-01 c.52.1.17 74354 1iz5A 249 1.26e+00 d.131.1.2 83834 d.131.1.2 83835 1iv3A 152 1.48e+00 d.79.5.1 76828 1q8yA 373 1.61e+00 d.144.1.7 -11319 1adjA 421 1.64e+00 1adjA c.51.1.1 33188 d.104.1.1 40737 1rypI 222 1.72e+00 d.153.1.4 41877 1f2tB 148 2.16e+00 1f2tB 1ur1A 378 2.47e+00 c.1.8.3 -5311 1eceA 358 2.50e+00 1eceA c.1.8.3 28813 1h4vB 421 2.85e+00 1adjA c.51.1.1 60624 d.104.1.1 60625 1i1qA 520 2.93e+00 1qdlA d.161.1.1 61543 1howA 373 2.96e+00 1hcl d.144.1.7 41679 1k20A 310 3.08e+00 c.107.1.1 68027 1flcA 432 3.09e+00 1flcA b.19.1.3 23837 c.23.10.2 31337 1uouA 474 3.70e+00 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 1v8dA 235 4.12e+00 1fzrA 138 4.18e+00 1fzrA c.52.1.17 33336 1lshB 319 4.34e+00 f.7.1.1 74245 1ex2A 189 4.37e+00 1ex2A c.51.4.2 33225 1fwkA 296 5.07e+00 1fwkA d.14.1.5 37576 d.58.26.1 39398 1tc1A 220 5.17e+00 1tc1A c.61.1.1 34083 1j7nA 776 5.55e+00 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1eluA 390 5.62e+00 1elqA c.67.1.3 34434 1i60A 278 5.67e+00 c.1.15.4 71118 2ptd 298 5.71e+00 2plc c.1.18.2 29605 1e4mM 501 6.01e+00 1e70M c.1.8.4 59226 1elqA 390 6.18e+00 1elqA c.67.1.3 34436 1jznA 135 6.22e+00 d.169.1.1 84262 1h72C 296 6.26e+00 d.14.1.5 60712 d.58.26.1 60713 2myr 501 6.30e+00 1ev0A 58 6.63e+00 1ev0A d.71.1.1 39594 1k1xA 659 6.95e+00 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1qlmA 316 7.03e+00 1qlmA d.147.1.1 41765 1r2rA 248 7.28e+00 c.1.1.1 -5147 1rypD 241 7.33e+00 1rypD d.153.1.4 41935 1p3wA 404 7.42e+00 c.67.1.3 87752 1qpxA 218 7.75e+00 1qpxA b.1.11.1 22318 b.7.2.1 23200 1ui0A 205 7.96e+00 c.18.1.2 -6328 1spvA 184 8.31e+00 c.50.1.2 -7937 1qysA 106 8.32e+00 unknown_sccs -13432 1tph1 247 8.50e+00 1amk 1qj5A 429 8.93e+00 1dtyA c.67.1.4 34493 1i74A 309 9.17e+00 1i74A c.107.1.1 61867 1p5jA 372 9.50e+00 7a3hA 303 9.56e+00 7a3hA c.1.8.3 28817 4enl 436 9.58e+00 4enl c.1.11.1 29202 d.54.1.1 38846 1hd7A 318 9.64e+00 1bix d.151.1.1 41780 1gt91 357 9.68e+00 1b5tA 275 9.68e+00 1b5tA c.1.23.1 29676 1htyA 1015 9.69e+00 a.8.3.1 83064 b.30.5.6 83065 c.6.2.1 83066 1qwnA 1045 9.70e+00 a.8.3.1 -414 b.30.5.6 -3517 c.6.2.1 -6058 1h49A 512 9.87e+00 c.1.8.4 83477 3bamA 213 9.99e+00 1bam c.52.1.3 33288 1sviA 195 1.00e+01 1e55A 512 1.01e+01 1e70M c.1.8.4 28934 1faeA 629 1.01e+01 1fce a.102.1.2 18837 1nvmB 312 1.02e+01 c.2.1.3 86251 d.81.1.1 86252 1mo0A 275 1.02e+01 c.1.1.1 79329 1esgA 213 1.02e+01 1bam c.52.1.3 33286 1ii7A 333 1.06e+01 1ii7A d.159.1.4 62415 1ihnA 113 1.12e+01 1ihnA c.103.1.1 62388 1p7tA 731 1.12e+01 c.1.13.1 -5600 1acf 125 1.13e+01 3nul d.110.1.1 40882 1v02A 565 1.13e+01 1dbfA 127 1.16e+01 2chsA d.79.1.2 39761 2liv 344 1.17e+01 2liv c.93.1.1 35708 1g9gA 629 1.19e+01 a.102.1.2 83279 1bu8A 452 1.22e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 1ako 268 1.26e+01 1ako d.151.1.1 41779 1nw1A 429 1.28e+01 d.144.1.8 86286 1glcG 501 1.31e+01 1glcG c.55.1.4 33519 c.55.1.4 33520 1ufaA 520 1.34e+01 unknown_sccs -421 unknown_sccs -6065 1brwA 433 1.34e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1czaN 917 1.35e+01 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 1lldA 319 1.36e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1iyhA 198 1.36e+01 a.45.1.1 83790 c.47.1.5 83791 1m6jA 261 1.38e+01 c.1.1.1 78693 1fzyA 149 1.58e+01 d.20.1.1 65072 1iicA 422 1.60e+01 1nmtA d.108.1.2 62422 d.108.1.2 62423 1g8aA 227 1.63e+01 c.66.1.3 -8049 1k6xA 352 1.69e+01 c.2.1.2 68238 1d3yA 301 1.77e+01 1d3yA e.12.1.1 43252 1r62A 160 1.77e+01 1em2A 229 1.77e+01 1em2A d.129.3.2 41321 1jwqA 179 1.91e+01 unknown_sccs -7897 1n0lA 224 1.91e+01 b.1.11.1 79744 b.7.2.1 79745 1qddA 144 1.93e+01 1qddA d.169.1.1 42324 1a8h 500 1.96e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1oneA 436 2.06e+01 4enl c.1.11.1 29200 d.54.1.1 38844 1s0aA 429 2.08e+01 c.67.1.4 -8201 1mj5A 302 2.18e+01 c.69.1.8 -8326 1l1qA 186 2.20e+01 c.61.1.1 77653 1t3lA 337 2.20e+01 1ni4A 365 2.21e+01 c.36.1.7 85728 1fjgJ 105 2.31e+01 1fjfJ d.58.15.1 39330 1bzyA 217 2.33e+01 1qk3A c.61.1.1 34071 1nqzA 194 2.35e+01 d.113.1.1 86077 1qmvA 197 2.38e+01 1qq2A c.47.1.10 33066 1rp4A 389 2.40e+01 1cqqA 180 2.47e+01 1cqqA b.47.1.4 26422 1plq 258 2.51e+01 1plq d.131.1.2 41388 d.131.1.2 41389 1atiA 505 2.68e+01 1atiA c.51.1.1 33196 d.104.1.1 40745 1id0A 152 2.69e+01 d.122.1.3 66111 1gk9B 557 2.69e+01 1e3aB 560 2.71e+01 1ajqB 1cv2A 296 2.78e+01 1bn6A c.69.1.8 34680 1ab8A 220 2.80e+01 1azsA d.58.29.1 39414 1bu6O 501 2.86e+01 1glcG c.55.1.4 33499 c.55.1.4 33500 1gpl 432 2.91e+01 1gpl b.12.1.2 23645 c.69.1.19 34793 1uvqB 198 2.92e+01 b.1.1.2 -2659 d.19.1.1 -9348 1l7mA 211 2.94e+01 c.108.1.4 73664 1g0cA 364 2.95e+01 7a3hA c.1.8.3 60165 1rjdA 334 2.96e+01 unknown_sccs -8079 1j97A 211 2.98e+01 1f5sA c.108.1.4 62753 1bjnA 360 2.98e+01 1bjnA c.67.1.4 34469 1p3dA 475 2.98e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1rkqA 282 2.99e+01 c.108.1.10 -6847 1nnlA 225 3.02e+01 c.108.1.4 85906 1phk 298 3.12e+01 1cdkA d.144.1.7 41635 1mml 265 3.12e+01 1mml e.8.1.2 43015 1rzjG 321 3.15e+01 d.172.1.1 -11666 1qwoA 442 3.22e+01 1k2yX 463 3.22e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1iyxA 432 3.26e+01 c.1.11.1 83815 d.54.1.1 83816 1c8bA 371 3.29e+01 1c8bA c.56.1.2 59082 1qhtA 775 3.33e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1ukkA 142 3.35e+01 d.227.1.1 -11206 1rpxA 230 3.37e+01 1rpxA c.1.2.2 28536 1g9mG 321 3.39e+01 1gc1G d.172.1.1 42492 1owfA 99 3.43e+01 a.55.1.1 87487 1mijA 152 3.47e+01 a.4.1.1 79150 1pjr 724 3.49e+01 1pjr c.37.1.19 32391 c.37.1.19 32392 1qr6A 584 3.62e+01 1qr6A c.2.1.7 30293 c.58.1.3 33941 1oz9A 150 3.64e+01 unknown_sccs -10588 1h9oA 112 3.66e+01 1qadA d.93.1.1 60837 1kz1A 159 3.69e+01 c.16.1.1 73318 1sdoA 203 3.72e+01 unknown_sccs -7558 1nkqA 259 3.73e+01 2cb5A 453 3.82e+01 3gcb d.3.1.1 37035 1onrA 316 3.85e+01 1onrA c.1.10.1 29169 1ftrA 296 3.88e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1j1iA 296 3.90e+01 c.69.1.10 83977 1q4rA 112 3.99e+01 d.58.4.4 -9943