# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iv3A 152 8.58e-02 d.79.5.1 76828 1gd0A 122 1.00e-01 1dptA d.80.1.3 39834 1s0yA 76 1.78e-01 d.80.1.1 -10434 1hfoA 113 2.30e-01 d.80.1.3 61006 1qysA 106 4.74e-01 unknown_sccs -13432 1qlmA 316 4.82e-01 1qlmA d.147.1.1 41765 1eluA 390 5.79e-01 1elqA c.67.1.3 34434 2cb5A 453 6.45e-01 3gcb d.3.1.1 37035 1ev0A 58 7.39e-01 1ev0A d.71.1.1 39594 1elqA 390 7.68e-01 1elqA c.67.1.3 34436 1odoA 408 8.68e-01 a.104.1.1 -1463 1dptA 117 1.03e+00 1dptA d.80.1.3 39862 1mjc 69 1.11e+00 1mjc b.40.4.5 25319 1jwqA 179 1.35e+00 unknown_sccs -7897 1m4jA 142 1.89e+00 d.109.1.2 78602 1oshA 232 2.06e+00 a.123.1.1 -1697 1goiA 499 2.19e+00 b.72.2.1 65413 c.1.8.5 65414 d.26.3.1 65415 1v8dA 235 2.59e+00 1fjgJ 105 2.86e+00 1fjfJ d.58.15.1 39330 1spgB 147 2.87e+00 1cg5B a.1.1.2 15588 1cg5A 141 2.89e+00 1abwA a.1.1.2 15406 1e6pA 499 3.36e+00 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1ur1A 378 3.38e+00 c.1.8.3 -5311 1i37A 260 3.39e+00 1a28A a.123.1.1 61583 1odmA 331 3.47e+00 b.82.2.1 86875 1cg5B 141 3.54e+00 1cg5B a.1.1.2 15585 1bk0 331 3.72e+00 1bk0 b.82.2.1 28118 1bif 469 4.02e+00 1bif c.37.1.7 31961 c.60.1.4 34003 1p4kA 295 4.14e+00 d.153.1.5 87772 1p3wA 404 4.27e+00 c.67.1.3 87752 9gafA 295 4.56e+00 1apyA d.153.1.5 42008 1fm0E 150 4.67e+00 1fmaE d.41.5.1 38629 1jznA 135 4.71e+00 d.169.1.1 84262 1kkoA 413 5.06e+00 c.1.11.2 68675 d.54.1.1 68676 1dbfA 127 5.46e+00 2chsA d.79.1.2 39761 2gsq 202 5.93e+00 1pd21 a.45.1.1 17715 c.47.1.5 33009 1d2eA 397 6.13e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1p7tA 731 6.22e+00 c.1.13.1 -5600 1sdoA 203 6.28e+00 unknown_sccs -7558 1jo0A 98 6.40e+00 d.68.4.1 77140 1i60A 278 6.55e+00 c.1.15.4 71118 2lhb 149 6.65e+00 2fal a.1.1.2 15597 1jf3A 147 6.85e+00 a.1.1.2 71642 1s3jA 155 6.87e+00 a.4.5.28 -227 1diiC 80 7.03e+00 1diiC a.3.1.1 15925 1hgxA 183 7.10e+00 1tc1A c.61.1.1 34027 1uf2C 421 7.73e+00 unknown_sccs -1522 b.19.1.1 -3155 2reb 352 7.76e+00 2reb c.37.1.11 32282 d.48.1.1 38767 1ufaA 520 7.86e+00 unknown_sccs -421 unknown_sccs -6065 1qhtA 775 8.05e+00 1tgoA c.55.3.5 33722 e.8.1.1 43011 1k3xA 262 8.23e+00 a.156.1.2 77242 b.113.1.1 77243 g.39.1.8 77244 1bjnA 360 8.41e+00 1bjnA c.67.1.4 34469 1exbA 332 8.50e+00 1qrqA c.1.7.1 28666 1o5xA 248 8.87e+00 c.1.1.1 -5157 1souA 194 8.93e+00 1g5cA 170 9.00e+00 1g5cA c.53.2.1 60264 1rl6A 177 9.56e+00 1rl6A d.141.1.1 41473 d.141.1.1 41474 2phlA 397 1.00e+01 1dgwA b.82.1.2 28082 b.82.1.2 28083 1lyxA 248 1.07e+01 c.1.1.1 78304 1gyxA 76 1.10e+01 d.80.1.1 76387 1gp6A 356 1.12e+01 b.82.2.1 65441 1iw0A 215 1.14e+01 a.132.1.1 83720 1c9oA 66 1.20e+01 1mjc b.40.4.5 25325 1nrjA 158 1.23e+01 d.110.4.4 86124 1fp2A 352 1.25e+01 1fpxA a.4.5.29 59941 c.66.1.12 59942 1qr6A 584 1.29e+01 1qr6A c.2.1.7 30293 c.58.1.3 33941 1uu1A 335 1.33e+01 c.67.1.1 -8146 1pvdA 537 1.33e+01 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1gwiA 411 1.35e+01 a.104.1.1 76364 1a88A 275 1.36e+01 1brt c.69.1.12 34707 1cqqA 180 1.39e+01 1cqqA b.47.1.4 26422 1v5wA 343 1.46e+01 1qlpA 394 1.52e+01 1ovaA e.1.1.1 42628 2ts1 419 1.59e+01 2ts1 c.26.1.1 31564 1s9rA 410 1.71e+01 unknown_sccs -10989 1ln4A 104 1.72e+01 d.68.4.1 74043 1babA 143 1.72e+01 1abwA a.1.1.2 15235 1b25A 619 1.76e+01 1b25A a.110.1.1 19044 d.152.1.1 41796 1j3wA 163 1.78e+01 unknown_sccs -10870 1kufA 203 1.94e+01 d.92.1.9 73007 1o6dA 163 1.94e+01 c.116.1.3 -6689 3gcb 470 1.98e+01 3gcb d.3.1.1 37032 1uvqB 198 2.06e+01 b.1.1.2 -2659 d.19.1.1 -9348 1rp4A 389 2.07e+01 1uedA 406 2.11e+01 a.104.1.1 -1459 1nzeA 149 2.16e+01 unknown_sccs -599 1qd1A 325 2.19e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1uhvA 500 2.19e+01 b.71.1.2 -4683 c.1.8.3 -5354 1kugA 203 2.20e+01 d.92.1.9 73008 1i74A 309 2.23e+01 1i74A c.107.1.1 61867 1cy5A 97 2.24e+01 1cy5A a.77.1.3 18430 2hbg 147 2.34e+01 2hbg a.1.1.2 15014 1di0A 158 2.39e+01 1di0A c.16.1.1 30957 1ozjA 144 2.41e+01 d.164.1.1 -11537 1cmiA 85 2.48e+01 1cmiA d.39.1.1 38551 1j7lA 264 2.50e+01 d.144.1.6 62697 1ab4 477 2.51e+01 1ab4 e.11.1.1 43251 1irdA 141 2.53e+01 a.1.1.2 66286 1j7yA 141 2.69e+01 a.1.1.2 66426 1mugA 168 2.72e+01 1mugA c.18.1.2 31030 1r6wA 322 2.79e+01 c.1.11.2 -5563 d.54.1.1 -9821 1cr1A 296 2.79e+01 1cr1A c.37.1.11 32286 1mixA 206 2.88e+01 a.11.2.1 79166 b.55.1.5 79167 1qjbA 245 2.93e+01 1qjaA a.118.7.1 19202 1jrrA 382 2.97e+01 e.1.1.1 63256 1qo0D 196 3.04e+01 1qo0D c.23.1.3 31125 1zrn 232 3.06e+01 1qq5A c.108.1.1 43323 1ibrB 462 3.08e+01 1qgrA a.118.1.1 19120 1ak0 270 3.11e+01 1ak0 a.124.1.2 19345 1tig 94 3.15e+01 1tig d.68.1.1 39566 1ig3A 263 3.17e+01 1ig3A b.82.6.1 62358 c.100.1.1 62359 1otgA 125 3.19e+01 1otgA d.80.1.2 39831 1g8iA 190 3.20e+01 1rec a.39.1.5 60363 1iyhA 198 3.21e+01 a.45.1.1 83790 c.47.1.5 83791 1qc7A 101 3.24e+01 1qc7A a.118.14.1 18456 1t0yA 122 3.28e+01 d.15.1.1 -9151 7aatA 401 3.38e+01 1ajsA c.67.1.1 34250 1n2zA 245 3.38e+01 c.92.2.2 79865 1gcb 454 3.40e+01 3gcb d.3.1.1 37034 1tc1A 220 3.42e+01 1tc1A c.61.1.1 34083 1ax8 146 3.66e+01 1ax8 a.26.1.1 16844 1cjbA 231 3.66e+01 1qk3A c.61.1.1 34079 1khbA 625 3.68e+01 c.91.1.1 68606 c.109.1.1 68607 1d7uA 433 3.76e+01 2dkb c.67.1.4 34439 1k8kF 168 3.76e+01 d.198.2.1 68312 1go3F 107 3.78e+01 a.60.8.2 65407 1ed1A 135 3.81e+01 1hiwA a.61.1.1 18130 1dgfA 497 3.82e+01 1cf9A e.5.1.1 42782 1ddgA 374 3.95e+01 1amoA b.43.4.1 25671 c.25.1.4 31559 1rztA 331 3.99e+01 a.60.6.1 -1023 a.60.12.1 -1030 d.218.1.2 -9807 1dmhA 311 4.00e+01 1dmhA b.3.6.1 22633