# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hfoA 113 5.15e-02 d.80.1.3 61006 1gyxA 76 2.90e-01 d.80.1.1 76387 1dptA 117 3.75e-01 1dptA d.80.1.3 39862 9gafA 295 5.80e-01 1apyA d.153.1.5 42008 1p4kA 295 5.96e-01 d.153.1.5 87772 1m0dA 138 9.72e-01 c.52.1.17 74354 1k6xA 352 1.15e+00 c.2.1.2 68238 1s0yA 76 1.25e+00 d.80.1.1 -10434 1gd0A 122 1.27e+00 1dptA d.80.1.3 39834 1e4mM 501 2.22e+00 1e70M c.1.8.4 59226 2myr 501 2.44e+00 1rypI 222 2.68e+00 d.153.1.4 41877 1pwhA 327 2.76e+00 c.79.1.1 -8524 1fzrA 138 3.03e+00 1fzrA c.52.1.17 33336 1ow1A 195 3.20e+00 unknown_sccs -4422 1iv3A 152 3.61e+00 d.79.5.1 76828 1flcA 432 3.63e+00 1flcA b.19.1.3 23837 c.23.10.2 31337 1ii7A 333 3.71e+00 1ii7A d.159.1.4 62415 1cqqA 180 4.13e+00 1cqqA b.47.1.4 26422 1qj5A 429 4.64e+00 1dtyA c.67.1.4 34493 1mwwA 128 4.67e+00 unknown_sccs -10451 1rpxA 230 4.79e+00 1rpxA c.1.2.2 28536 1otfA 62 6.70e+00 1otfA d.80.1.1 39820 1ni4A 365 7.83e+00 c.36.1.7 85728 1m4jA 142 8.65e+00 d.109.1.2 78602 1jznA 135 8.66e+00 d.169.1.1 84262 1iz5A 249 9.28e+00 d.131.1.2 83834 d.131.1.2 83835 1e5dA 402 9.56e+00 1e5dA c.23.5.1 31208 d.157.1.3 42061 1owfA 99 1.11e+01 a.55.1.1 87487 1ex2A 189 1.22e+01 1ex2A c.51.4.2 33225 1ur1A 378 1.25e+01 c.1.8.3 -5311 1otgA 125 1.26e+01 1otgA d.80.1.2 39831 1i1qA 520 1.28e+01 1qdlA d.161.1.1 61543 1s0aA 429 1.28e+01 c.67.1.4 -8201 1vi2A 300 1.29e+01 c.2.1.7 -5960 c.58.1.5 -6366 1esgA 213 1.37e+01 1bam c.52.1.3 33286 1tc1A 220 1.40e+01 1tc1A c.61.1.1 34083 1nw1A 429 1.40e+01 d.144.1.8 86286 1qysA 106 1.41e+01 unknown_sccs -13432 1atiA 505 1.41e+01 1atiA c.51.1.1 33196 d.104.1.1 40745 1rypD 241 1.47e+01 1rypD d.153.1.4 41935 1uuqA 440 1.49e+01 c.1.8.3 -5321 1g8aA 227 1.50e+01 c.66.1.3 -8049 3bamA 213 1.51e+01 1bam c.52.1.3 33288 1v8dA 235 1.52e+01 1ev0A 58 1.53e+01 1ev0A d.71.1.1 39594 1p7tA 731 1.55e+01 c.1.13.1 -5600 1rp4A 389 1.58e+01 1v02A 565 1.67e+01 1fiuA 286 1.72e+01 1fiuA c.52.1.10 33317 1xel 338 1.73e+01 1xel c.2.1.2 29786 1kkoA 413 1.73e+01 c.1.11.2 68675 d.54.1.1 68676 1bjx 110 1.76e+01 1bjx c.47.1.2 32774 1spvA 184 1.86e+01 c.50.1.2 -7937 1k20A 310 1.88e+01 c.107.1.1 68027 1ukuA 102 2.00e+01 d.58.5.2 -9992 1hnuA 280 2.00e+01 1hnoA c.14.1.3 61096 1uvqB 198 2.05e+01 b.1.1.2 -2659 d.19.1.1 -9348 2liv 344 2.06e+01 2liv c.93.1.1 35708 1owfB 94 2.11e+01 a.55.1.1 87488 1fwkA 296 2.14e+01 1fwkA d.14.1.5 37576 d.58.26.1 39398 1d8cA 723 2.15e+01 1d8cA c.1.13.1 29325 1uw4A 91 2.19e+01 unknown_sccs -10038 1pf5A 131 2.37e+01 d.79.1.1 -10368 1dbfA 127 2.40e+01 2chsA d.79.1.2 39761 1jwqA 179 2.45e+01 unknown_sccs -7897 1qwoA 442 2.47e+01 1udc 338 2.49e+01 1xel c.2.1.2 29785 1i7kA 179 2.53e+01 1u9aA d.20.1.1 61889 1q8yA 373 2.60e+01 d.144.1.7 -11319 1k1xA 659 2.71e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1bjnA 360 2.81e+01 1bjnA c.67.1.4 34469 1i60A 278 2.81e+01 c.1.15.4 71118 1h49A 512 2.86e+01 c.1.8.4 83477 1e55A 512 2.90e+01 1e70M c.1.8.4 28934 1jkxA 212 3.00e+01 c.65.1.1 66813 1gt91 357 3.05e+01 1i58A 189 3.12e+01 1b3qA d.122.1.3 61773 1ji8A 111 3.12e+01 d.203.1.1 66733 1f2tB 148 3.18e+01 1f2tB 1a0rP 245 3.20e+01 1b9yC c.47.1.6 33054 1dmhA 311 3.33e+01 1dmhA b.3.6.1 22633 1eceA 358 3.36e+01 1eceA c.1.8.3 28813 1iyhA 198 3.43e+01 a.45.1.1 83790 c.47.1.5 83791 1npeA 267 3.44e+01 b.68.5.1 -4588 1howA 373 3.46e+01 1hcl d.144.1.7 41679 1avaA 403 3.47e+01 1jdc b.71.1.1 27797 c.1.8.1 28784 1glcG 501 3.73e+01 1glcG c.55.1.4 33519 c.55.1.4 33520 1ftrA 296 3.76e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1b6rA 355 3.81e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1sviA 195 3.89e+01 1lshB 319 3.98e+01 f.7.1.1 74245