# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hfoA 113 9.78e-04 d.80.1.3 61006 1dptA 117 6.21e-03 1dptA d.80.1.3 39862 1gyxA 76 2.45e-02 d.80.1.1 76387 9gafA 295 2.58e-02 1apyA d.153.1.5 42008 1p4kA 295 2.64e-02 d.153.1.5 87772 1gd0A 122 3.60e-02 1dptA d.80.1.3 39834 1mwwA 128 3.30e-01 unknown_sccs -10451 1otfA 62 5.33e-01 1otfA d.80.1.1 39820 1iv3A 152 6.22e-01 d.79.5.1 76828 1ow1A 195 6.35e-01 unknown_sccs -4422 1s0yA 76 6.97e-01 d.80.1.1 -10434 1g8aA 227 7.60e-01 c.66.1.3 -8049 1qj5A 429 1.00e+00 1dtyA c.67.1.4 34493 1pwhA 327 1.52e+00 c.79.1.1 -8524 1nw1A 429 1.90e+00 d.144.1.8 86286 1otgA 125 2.01e+00 1otgA d.80.1.2 39831 1ex2A 189 2.98e+00 1ex2A c.51.4.2 33225 1q8yA 373 3.55e+00 d.144.1.7 -11319 1k6xA 352 3.75e+00 c.2.1.2 68238 1howA 373 3.89e+00 1hcl d.144.1.7 41679 1qlmA 316 4.19e+00 1qlmA d.147.1.1 41765 1eluA 390 4.27e+00 1elqA c.67.1.3 34434 1elqA 390 4.49e+00 1elqA c.67.1.3 34436 1tc1A 220 4.65e+00 1tc1A c.61.1.1 34083 1rypD 241 4.79e+00 1rypD d.153.1.4 41935 1adjA 421 4.84e+00 1adjA c.51.1.1 33188 d.104.1.1 40737 2liv 344 4.93e+00 2liv c.93.1.1 35708 1m0dA 138 5.08e+00 c.52.1.17 74354 1ev0A 58 5.30e+00 1ev0A d.71.1.1 39594 1rypI 222 5.57e+00 d.153.1.4 41877 1dbfA 127 5.68e+00 2chsA d.79.1.2 39761 1ur1A 378 5.78e+00 c.1.8.3 -5311 1s0aA 429 6.14e+00 c.67.1.4 -8201 1v8dA 235 6.71e+00 1mj5A 302 6.91e+00 c.69.1.8 -8326 1flcA 432 6.93e+00 1flcA b.19.1.3 23837 c.23.10.2 31337 1qysA 106 6.98e+00 unknown_sccs -13432 1p3wA 404 7.13e+00 c.67.1.3 87752 1i1qA 520 7.67e+00 1qdlA d.161.1.1 61543 1r2rA 248 7.83e+00 c.1.1.1 -5147 1kz1A 159 7.91e+00 c.16.1.1 73318 1cqqA 180 7.95e+00 1cqqA b.47.1.4 26422 1i58A 189 8.35e+00 1b3qA d.122.1.3 61773 1h4vB 421 8.57e+00 1adjA c.51.1.1 60624 d.104.1.1 60625 1owfA 99 8.93e+00 a.55.1.1 87487 1g8sA 230 9.64e+00 c.66.1.3 -8047 1tph1 247 9.94e+00 1amk 1fbnA 230 1.01e+01 1fbnA c.66.1.3 34181 1r0pA 312 1.04e+01 d.144.1.7 -11377 1ufaA 520 1.05e+01 unknown_sccs -421 unknown_sccs -6065 1b6rA 355 1.06e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1k1xA 659 1.06e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1qwoA 442 1.13e+01 1mo0A 275 1.15e+01 c.1.1.1 79329 1rp4A 389 1.20e+01 1q4rA 112 1.21e+01 d.58.4.4 -9943 1htyA 1015 1.22e+01 a.8.3.1 83064 b.30.5.6 83065 c.6.2.1 83066 1qwnA 1045 1.22e+01 a.8.3.1 -414 b.30.5.6 -3517 c.6.2.1 -6058 1cv2A 296 1.23e+01 1bn6A c.69.1.8 34680 1rpxA 230 1.33e+01 1rpxA c.1.2.2 28536 1ui0A 205 1.36e+01 c.18.1.2 -6328 1rpnA 335 1.43e+01 c.2.1.2 -5759 1iz5A 249 1.46e+01 d.131.1.2 83834 d.131.1.2 83835 1eceA 358 1.47e+01 1eceA c.1.8.3 28813 1f2tB 148 1.47e+01 1f2tB 1usgA 346 1.48e+01 c.93.1.1 -8635 1qpxA 218 1.55e+01 1qpxA b.1.11.1 22318 b.7.2.1 23200 1m6jA 261 1.55e+01 c.1.1.1 78693 1jkxA 212 1.59e+01 c.65.1.1 66813 1nvmB 312 1.59e+01 c.2.1.3 86251 d.81.1.1 86252 1e4mM 501 1.62e+01 1e70M c.1.8.4 59226 2lbp 346 1.62e+01 2liv c.93.1.1 35709 1lshB 319 1.63e+01 f.7.1.1 74245 1uouA 474 1.65e+01 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 1czaN 917 1.68e+01 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 2myr 501 1.71e+01 1m4jA 142 1.72e+01 d.109.1.2 78602 1p5jA 372 1.75e+01 1p7tA 731 1.79e+01 c.1.13.1 -5600 1bjx 110 1.85e+01 1bjx c.47.1.2 32774 1h49A 512 1.86e+01 c.1.8.4 83477 1e55A 512 1.86e+01 1e70M c.1.8.4 28934 1v02A 565 1.90e+01 1owfB 94 1.95e+01 a.55.1.1 87488 1atiA 505 2.00e+01 1atiA c.51.1.1 33196 d.104.1.1 40745 1uw4A 91 2.01e+01 unknown_sccs -10038 1azsB 212 2.04e+01 1azsA d.58.29.1 39423 1i7kA 179 2.13e+01 1u9aA d.20.1.1 61889 1on3A 523 2.17e+01 c.14.1.4 87107 c.14.1.4 87108 1ftrA 296 2.21e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1i60A 278 2.21e+01 c.1.15.4 71118 1gnxA 479 2.25e+01 c.1.8.4 76241 1fzrA 138 2.27e+01 1fzrA c.52.1.17 33336 1e6pA 499 2.30e+01 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1mml 265 2.34e+01 1mml e.8.1.2 43015 1ihnA 113 2.38e+01 1ihnA c.103.1.1 62388 1qfjA 232 2.38e+01 1qfjA b.43.4.2 25655 c.25.1.1 31545 1xel 338 2.44e+01 1xel c.2.1.2 29786 1k8kD 300 2.46e+01 d.198.2.1 68309 d.198.2.1 68310 1uvqB 198 2.54e+01 b.1.1.2 -2659 d.19.1.1 -9348 1ab8A 220 2.58e+01 1azsA d.58.29.1 39414 1qz8A 113 2.73e+01 unknown_sccs -4264 1hskA 326 2.86e+01 2mbr d.145.1.2 61241 d.146.1.1 61242 1iyhA 198 2.89e+01 a.45.1.1 83790 c.47.1.5 83791 2pth 193 2.90e+01 2pth c.56.3.1 33793 1pjr 724 2.96e+01 1pjr c.37.1.19 32391 c.37.1.19 32392 1b5tA 275 2.96e+01 1b5tA c.1.23.1 29676 1jznA 135 2.97e+01 d.169.1.1 84262 1e5dA 402 3.02e+01 1e5dA c.23.5.1 31208 d.157.1.3 42061 1ntvA 152 3.03e+01 b.55.1.2 86168 1uch 230 3.08e+01 1uch d.3.1.6 37129 1cnv 299 3.23e+01 1cnv c.1.8.5 28989 1fjgJ 105 3.24e+01 1fjfJ d.58.15.1 39330 1bu8A 452 3.25e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 1l1qA 186 3.27e+01 c.61.1.1 77653 1d3yA 301 3.31e+01 1d3yA e.12.1.1 43252 1jwqA 179 3.33e+01 unknown_sccs -7897 1dkuA 317 3.38e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1fwkA 296 3.40e+01 1fwkA d.14.1.5 37576 d.58.26.1 39398 1q44A 326 3.52e+01 c.37.1.5 -7037 1goiA 499 3.59e+01 b.72.2.1 65413 c.1.8.5 65414 d.26.3.1 65415 1em2A 229 3.64e+01 1em2A d.129.3.2 41321 1rz3A 201 3.65e+01 c.37.1.6 -7048 1oaoA 674 3.67e+01 e.26.1.2 86744 1sviA 195 3.68e+01 1ir3A 306 3.70e+01 1fmk d.144.1.7 41702 1h4pA 408 3.75e+01 c.1.8.3 -5314 1ii7A 333 3.78e+01 1ii7A d.159.1.4 62415 1phk 298 3.79e+01 1cdkA d.144.1.7 41635 1dmhA 311 3.80e+01 1dmhA b.3.6.1 22633 1bjnA 360 3.88e+01 1bjnA c.67.1.4 34469 1d8cA 723 3.89e+01 1d8cA c.1.13.1 29325 1fzyA 149 3.90e+01 d.20.1.1 65072 1ni4A 365 3.92e+01 c.36.1.7 85728 1t82A 155 4.00e+01