# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hfoA 113 4.50e-03 d.80.1.3 61006 1dptA 117 1.11e-02 1dptA d.80.1.3 39862 1gyxA 76 2.52e-02 d.80.1.1 76387 1s0yA 76 3.01e-02 d.80.1.1 -10434 1otfA 62 4.68e-02 1otfA d.80.1.1 39820 1gd0A 122 7.04e-02 1dptA d.80.1.3 39834 9gafA 295 1.26e-01 1apyA d.153.1.5 42008 1p4kA 295 1.57e-01 d.153.1.5 87772 1ow1A 195 4.06e-01 unknown_sccs -4422 1qysA 106 5.20e-01 unknown_sccs -13432 1iv3A 152 9.77e-01 d.79.5.1 76828 1dmhA 311 1.07e+00 1dmhA b.3.6.1 22633 1mwwA 128 1.46e+00 unknown_sccs -10451 1pjhA 280 1.63e+00 c.14.1.3 -6229 1hnuA 280 1.70e+00 1hnoA c.14.1.3 61096 1m4jA 142 1.92e+00 d.109.1.2 78602 1ii7A 333 2.14e+00 1ii7A d.159.1.4 62415 1f2tB 148 2.30e+00 1f2tB 1b5tA 275 2.52e+00 1b5tA c.1.23.1 29676 1ex2A 189 2.77e+00 1ex2A c.51.4.2 33225 1uuqA 440 2.86e+00 c.1.8.3 -5321 1oneA 436 2.93e+00 4enl c.1.11.1 29200 d.54.1.1 38844 4enl 436 3.14e+00 4enl c.1.11.1 29202 d.54.1.1 38846 1pwhA 327 3.36e+00 c.79.1.1 -8524 1vi2A 300 3.54e+00 c.2.1.7 -5960 c.58.1.5 -6366 1uvqB 198 3.65e+00 b.1.1.2 -2659 d.19.1.1 -9348 1qlmA 316 3.88e+00 1qlmA d.147.1.1 41765 1bjnA 360 4.15e+00 1bjnA c.67.1.4 34469 1k6xA 352 4.16e+00 c.2.1.2 68238 2pth 193 4.58e+00 2pth c.56.3.1 33793 1fjgJ 105 4.58e+00 1fjfJ d.58.15.1 39330 1i60A 278 4.77e+00 c.1.15.4 71118 1ni4A 365 4.81e+00 c.36.1.7 85728 1k1xA 659 4.83e+00 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1eluA 390 4.92e+00 1elqA c.67.1.3 34434 2myr 501 5.66e+00 1otgA 125 5.67e+00 1otgA d.80.1.2 39831 1mml 265 5.69e+00 1mml e.8.1.2 43015 1fzyA 149 6.24e+00 d.20.1.1 65072 1elqA 390 6.35e+00 1elqA c.67.1.3 34436 1xel 338 6.80e+00 1xel c.2.1.2 29786 1ev0A 58 7.20e+00 1ev0A d.71.1.1 39594 1jihA 531 7.76e+00 unknown_sccs -10212 unknown_sccs -11922 1e4mM 501 7.86e+00 1e70M c.1.8.4 59226 1qr6A 584 8.32e+00 1qr6A c.2.1.7 30293 c.58.1.3 33941 1owfA 99 8.33e+00 a.55.1.1 87487 1bjx 110 8.45e+00 1bjx c.47.1.2 32774 1kb0A 677 8.68e+00 a.3.1.6 68378 b.70.1.1 68379 1nkxA 348 8.69e+00 c.94.1.2 -8704 1udc 338 8.90e+00 1xel c.2.1.2 29785 1ji8A 111 9.03e+00 d.203.1.1 66733 1id0A 152 9.79e+00 d.122.1.3 66111 1hnnA 282 9.94e+00 c.66.1.15 65895 1s0aA 429 1.01e+01 c.67.1.4 -8201 1b24A 188 1.01e+01 1b24A d.95.2.1 40573 d.95.2.1 40574 1ogiA 303 1.02e+01 b.43.4.2 -4042 c.25.1.1 -6587 1jwqA 179 1.04e+01 unknown_sccs -7897 1qj5A 429 1.10e+01 1dtyA c.67.1.4 34493 1v2zA 111 1.12e+01 1go2A 304 1.14e+01 b.43.4.2 76243 c.25.1.1 76244 1que 303 1.21e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1ihnA 113 1.22e+01 1ihnA c.103.1.1 62388 1p5jA 372 1.28e+01 1tc1A 220 1.32e+01 1tc1A c.61.1.1 34083 7a3hA 303 1.34e+01 7a3hA c.1.8.3 28817 1howA 373 1.38e+01 1hcl d.144.1.7 41679 1q7hA 153 1.39e+01 b.122.1.1 -5124 unknown_sccs -9313 1rypD 241 1.43e+01 1rypD d.153.1.4 41935 1lmb3 92 1.46e+01 1lmb3 1i58A 189 1.55e+01 1b3qA d.122.1.3 61773 1kkoA 413 1.60e+01 c.1.11.2 68675 d.54.1.1 68676 1q8yA 373 1.64e+01 d.144.1.7 -11319 1d2rA 326 1.67e+01 1d2rB c.26.1.1 31572 1ui0A 205 1.68e+01 c.18.1.2 -6328 1rpxA 230 1.70e+01 1rpxA c.1.2.2 28536 1rypI 222 1.73e+01 d.153.1.4 41877 1i7kA 179 1.73e+01 1u9aA d.20.1.1 61889 1edt 271 1.89e+01 2ebn c.1.8.5 28993 1pysA 350 1.94e+01 1pysA d.104.1.1 40775 1pqzA 238 2.05e+01 1obbA 480 2.12e+01 c.2.1.5 86760 d.162.1.2 86761 1pyoA 167 2.14e+01 c.17.1.1 -7932 1ur1A 378 2.17e+01 c.1.8.3 -5311 1exbA 332 2.19e+01 1qrqA c.1.7.1 28666 1q8rA 120 2.27e+01 unknown_sccs -10422 1pieA 419 2.28e+01 d.14.1.5 -9075 unknown_sccs -10120 1iicA 422 2.34e+01 1nmtA d.108.1.2 62422 d.108.1.2 62423 1e6pA 499 2.34e+01 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1im3D 95 2.35e+01 1im3D b.1.18.5 62568 1plq 258 2.47e+01 1plq d.131.1.2 41388 d.131.1.2 41389 1e5dA 402 2.58e+01 1e5dA c.23.5.1 31208 d.157.1.3 42061 1h8eD 482 2.64e+01 1skyE a.69.1.1 60747 b.49.1.1 60748 c.37.1.11 60749 1g8aA 227 2.72e+01 c.66.1.3 -8049 1bif 469 2.76e+01 1bif c.37.1.7 31961 c.60.1.4 34003 1b7yA 350 2.77e+01 1pysA d.104.1.1 40776 1k20A 310 2.77e+01 c.107.1.1 68027 1i6lA 328 2.83e+01 c.26.1.1 66041 1iyhA 198 2.86e+01 a.45.1.1 83790 c.47.1.5 83791 1xypA 190 2.86e+01 1axkA b.29.1.11 24327 1dbfA 127 2.88e+01 2chsA d.79.1.2 39761 1h72C 296 2.99e+01 d.14.1.5 60712 d.58.26.1 60713 1jtaA 361 3.00e+01 b.80.1.1 71859 1qhtA 775 3.00e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1a99A 344 3.01e+01 1pot c.94.1.1 35812 1gskA 513 3.05e+01 b.6.1.3 83314 b.6.1.3 83315 b.6.1.3 83316 1go4A 205 3.11e+01 d.135.1.1 70292 1esgA 213 3.12e+01 1bam c.52.1.3 33286 1mo0A 275 3.24e+01 c.1.1.1 79329 1cwpA 190 3.30e+01 1cwpA b.121.4.5 23305 1th8A 145 3.47e+01 1j8yF 297 3.55e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1oshA 232 3.55e+01 a.123.1.1 -1697 1qqrA 138 3.56e+01 1bmlC d.15.5.1 37721 1hqsA 423 3.57e+01 1iso c.77.1.1 61154 1vhoA 346 3.58e+01 unknown_sccs -4283 c.56.5.4 -7893 1goiA 499 3.58e+01 b.72.2.1 65413 c.1.8.5 65414 d.26.3.1 65415 1hp5A 512 3.60e+01 1hp4A c.1.8.6 61113 d.92.2.1 61114 1rsy 152 3.69e+01 1rsy b.7.1.2 23192 1evlA 401 3.71e+01 1qf6A c.51.1.1 33202 d.104.1.1 40751 1pzrA 60 3.73e+01 unknown_sccs -815 1jakA 512 3.76e+01 c.1.8.6 66472 d.92.2.1 66473 1nmoA 247 3.77e+01 unknown_sccs -8746 1iakB 185 3.82e+01 1iakB b.1.1.2 21626 d.19.1.1 38200 1amy 403 3.85e+01 1jdc b.71.1.1 27799 c.1.8.1 28786 1uiuA 502 3.85e+01 c.94.1.1 -8674 1iapA 211 3.98e+01 a.91.1.1 62119