# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hfoA 113 7.87e-02 d.80.1.3 61006 1gd0A 122 2.43e-01 1dptA d.80.1.3 39834 1mjc 69 3.47e-01 1mjc b.40.4.5 25319 1di0A 158 3.66e-01 1di0A c.16.1.1 30957 1iv3A 152 7.54e-01 d.79.5.1 76828 1uf2C 421 1.06e+00 unknown_sccs -1522 b.19.1.1 -3155 1m4jA 142 1.23e+00 d.109.1.2 78602 1vi2A 300 2.05e+00 c.2.1.7 -5960 c.58.1.5 -6366 1odoA 408 2.79e+00 a.104.1.1 -1463 1mo7A 213 2.86e+00 d.220.1.1 85028 1cqqA 180 3.27e+00 1cqqA b.47.1.4 26422 1i37A 260 3.83e+00 1a28A a.123.1.1 61583 1k8kF 168 5.22e+00 d.198.2.1 68312 1dptA 117 5.53e+00 1dptA d.80.1.3 39862 1qysA 106 7.43e+00 unknown_sccs -13432 1mjuL 219 7.76e+00 b.1.1.1 -2083 b.1.1.2 -2360 1q3eA 207 8.08e+00 b.82.3.2 -4922 1rztA 331 8.46e+00 a.60.6.1 -1023 a.60.12.1 -1030 d.218.1.2 -9807 1i60A 278 1.00e+01 c.1.15.4 71118 1cg5A 141 1.01e+01 1abwA a.1.1.2 15406 1g8iA 190 1.09e+01 1rec a.39.1.5 60363 1uvqB 198 1.11e+01 b.1.1.2 -2659 d.19.1.1 -9348 1o6dA 163 1.11e+01 c.116.1.3 -6689 1fm0E 150 1.13e+01 1fmaE d.41.5.1 38629 1ed1A 135 1.23e+01 1hiwA a.61.1.1 18130 1k3bA 119 1.28e+01 b.61.5.1 72016 1nrjA 158 1.29e+01 d.110.4.4 86124 1ru3A 732 1.45e+01 e.26.1.3 -12021 1dmhA 311 1.52e+01 1dmhA b.3.6.1 22633 1spgB 147 1.54e+01 1cg5B a.1.1.2 15588 1cy5A 97 1.61e+01 1cy5A a.77.1.3 18430 1elqA 390 1.66e+01 1elqA c.67.1.3 34436 1b74A 254 1.75e+01 1b74A c.78.2.1 35264 c.78.2.1 35265 1eluA 390 1.75e+01 1elqA c.67.1.3 34434 1p7tA 731 1.91e+01 c.1.13.1 -5600 1qqrA 138 2.07e+01 1bmlC d.15.5.1 37721 1fjgJ 105 2.19e+01 1fjfJ d.58.15.1 39330 1kz1A 159 2.33e+01 c.16.1.1 73318 1wab 232 2.38e+01 1wab c.23.10.3 31341 1q44A 326 2.45e+01 c.37.1.5 -7037 1ig3A 263 2.45e+01 1ig3A b.82.6.1 62358 c.100.1.1 62359 1mzhA 225 2.63e+01 c.1.10.1 79698 1jguH 217 2.65e+01 b.1.1.1 66688 b.1.1.2 66689 1bza 262 2.78e+01 1btl e.3.1.1 42701 1ctqA 166 2.79e+01 1ctqA c.37.1.8 31965 1c9oA 66 2.93e+01 1mjc b.40.4.5 25325 1es9A 232 2.96e+01 1wab c.23.10.3 31340 1e6pA 499 2.97e+01 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1ibyA 112 2.98e+01 1ibzA b.6.1.4 62233 1uc7A 125 3.09e+01 c.47.1.1 -7414 1bjnA 360 3.11e+01 1bjnA c.67.1.4 34469 1q9rA 219 3.12e+01 b.1.1.1 -2109 b.1.1.2 -2375 1eg2A 319 3.14e+01 1eg2A c.66.1.11 34249 1iysA 262 3.21e+01 e.3.1.1 -11760 1sqhA 312 3.35e+01 unknown_sccs -10812 1goiA 499 3.47e+01 b.72.2.1 65413 c.1.8.5 65414 d.26.3.1 65415 1oshA 232 3.57e+01 a.123.1.1 -1697 1fm4A 159 3.82e+01 1bv1 d.129.3.1 76186 1cwpA 190 3.87e+01 1cwpA b.121.4.5 23305 1b06A 210 3.97e+01 1avmA a.2.11.1 15740 d.44.1.1 38737