PFRMAT RR
TARGET T0254
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MPHLRFRAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINTQYFAEGG
VYPMVEVLWFGREQQTQDQIAQVITDQIRQLLGADSHLAVVFIPLQRTAY
YLDGQHF
13 27 0 8 0.44115
57 90 0 8 0.41565
58 89 0 8 0.3383
25 36 0 8 0.3094
20 50 0 8 0.3026
73 82 0 8 0.2907
41 58 0 8 0.2907
41 89 0 8 0.25755
29 55 0 8 0.25755
38 78 0 8 0.24905
43 78 0 8 0.2346
9 31 0 8 0.2346
46 93 0 8 0.1887
31 47 0 8 0.1802
END