# List of top-scoring protein chains for T0252.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkiA 330 9.18e-41 e.3.1.2 84994 1i2sA 282 9.96e-02 e.3.1.1 71104 1iysA 262 3.21e-01 e.3.1.1 -11760 1iyoA 262 3.30e-01 e.3.1.1 76970 4blmA 265 3.91e-01 1btl e.3.1.1 42721 1ghpA 258 4.48e-01 1btl e.3.1.1 60520 1alq 266 4.70e-01 1btl e.3.1.1 42707 1mblA 256 6.19e-01 1btl e.3.1.1 42723 1kggA 258 6.62e-01 1btl e.3.1.1 42715 2fokA 579 6.75e-01 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1kge 258 7.57e-01 1btl e.3.1.1 42708 1omeA 258 7.78e-01 1btl e.3.1.1 42717 1pioA 257 7.81e-01 1btl e.3.1.1 42719 3blm 257 8.01e-01 1btl e.3.1.1 42709 1blp 257 8.59e-01 1btl e.3.1.1 42716 1kgf 258 9.08e-01 1btl e.3.1.1 42712 1bdfA 235 1.42e+00 1bdfA d.74.3.1 39727 d.181.1.1 42602 1dy6A 267 1.59e+00 1btl e.3.1.1 42732 1dja 258 2.71e+00 1btl e.3.1.1 42706 1djc 257 2.95e+00 1btl e.3.1.1 42710 1klxA 138 3.25e+00 a.118.18.1 77440 1ezvD 245 3.46e+00 1be3D a.3.1.3 59546 f.23.11.1 59547 1kb9D 246 3.47e+00 a.3.1.3 77317 f.23.11.1 77318 1kyoD 248 3.47e+00 a.3.1.3 73254 f.23.11.1 73255 1fokA 576 3.86e+00 2fokA a.4.5.12 16137 a.4.5.12 16138 a.4.5.12 16139 c.52.1.12 33325 1n3xA 366 5.29e+00 c.94.1.1 -8643 1nl5A 366 5.41e+00 c.94.1.1 -8644 1s03G 129 5.67e+00 1hzoA 271 5.90e+00 e.3.1.1 71092 1mdq 371 6.69e+00 4mbp c.94.1.1 35783 1fqbA 370 7.31e+00 4mbp c.94.1.1 59985 1anf 370 7.31e+00 4mbp c.94.1.1 35776 1ezoA 370 7.31e+00 4mbp c.94.1.1 59539 1nmuA 382 7.36e+00 c.94.1.1 80665 1svxB 395 7.37e+00 1mh3A 421 7.39e+00 a.4.1.1 79112 c.94.1.1 79113 1laxA 370 7.43e+00 c.94.1.1 84576 1mg1A 450 7.74e+00 4mbp c.94.1.1 35790 h.3.2.1 45753 1r6zA 509 8.08e+00 unknown_sccs -3620 c.94.1.1 -8646 2mysC 149 8.14e+00 1wdcC a.39.1.5 17323 1ad1A 266 8.18e+00 1aj2 c.1.21.1 29668 1a7lA 389 8.22e+00 4mbp c.94.1.1 35787 1hsjA 487 8.29e+00 4mbp a.4.5.28 61237 c.94.1.1 61238 1mvwC 147 8.31e+00 i.15.1.1 79525 1cqqA 180 8.49e+00 1cqqA b.47.1.4 26422 1dlpA 236 9.00e+00 1b2pA b.78.1.1 28000 b.78.1.1 28001 1omzA 293 9.90e+00 c.68.1.15 87093 1pd21 199 1.00e+01 1pd21 1dceB 331 1.02e+01 1dceB a.102.4.3 18872 1mpb 370 1.08e+01 4mbp c.94.1.1 35780 1kobA 387 1.09e+01 1tkiA d.144.1.7 41640 1e5mA 416 1.12e+01 1dd8A c.95.1.1 58973 c.95.1.1 58974 1bsg 266 1.26e+01 1btl e.3.1.1 42729 1l9gA 192 1.33e+01 c.18.1.2 84568 1vk2A 204 1.34e+01 c.18.1.2 -6326 1g81A 164 1.52e+01 1fw9A d.190.1.1 60336 1gghA 753 1.59e+01 1cf9A c.23.16.3 31465 e.5.1.1 42839 1ggeA 753 1.61e+01 1cf9A c.23.16.3 31449 e.5.1.1 42823 1gg9A 753 1.62e+01 1cf9A c.23.16.3 31445 e.5.1.1 42819 1jvyA 372 1.64e+01 c.94.1.1 63308 1g1bA 164 1.64e+01 1fw9A d.190.1.1 60202 2bnh 457 1.64e+01 1a4yA c.10.1.1 30850 1qf7A 753 1.66e+01 1cf9A c.23.16.3 31461 e.5.1.1 42835 1cf9A 753 1.67e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1eqnA 321 1.70e+01 1dd9A e.13.1.1 43256 1dd9A 338 1.73e+01 1dd9A e.13.1.1 43254 1pjjA 271 1.76e+01 1p81A 753 1.89e+01 c.23.16.3 -6551 e.5.1.1 -11844 1qwsA 753 1.90e+01 c.23.16.3 -6555 e.5.1.1 -11848 2shpA 525 1.91e+01 2shpA c.45.1.2 32683 d.93.1.1 40533 d.93.1.1 40534 1p80A 753 1.93e+01 c.23.16.3 -6547 e.5.1.1 -11840 1fw9A 164 1.96e+01 1fw9A d.190.1.1 60059 1of5A 221 1.97e+01 d.17.4.2 86933 1e25A 282 2.01e+01 1e25A e.3.1.1 42731 1p7zA 753 2.08e+01 c.23.16.3 -6543 e.5.1.1 -11836 1ckmA 330 2.15e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1m9zA 111 2.17e+01 g.7.1.3 78881 1ggkA 753 2.19e+01 1cf9A c.23.16.3 31453 e.5.1.1 42827 1upaA 573 2.20e+01 c.31.1.3 -6745 c.36.1.5 -6903 c.36.1.9 -6943 1jljA 189 2.21e+01 c.57.1.1 63169 1p7yA 753 2.24e+01 c.23.16.3 -6539 e.5.1.1 -11832 1mizB 201 2.24e+01 a.11.2.1 79172 b.55.1.5 79173 1bueA 265 2.26e+01 1btl e.3.1.1 42727 1mixA 206 2.27e+01 a.11.2.1 79166 b.55.1.5 79167 1cknB 329 2.29e+01 1ckmA b.40.4.6 25361 d.142.2.3 41588 1mk7B 192 2.35e+01 a.11.2.1 79219 b.55.1.5 79220 1ihcA 188 2.38e+01 1di6A c.57.1.1 62379 1gpr 162 2.39e+01 1gpr b.84.3.1 28267 1f9aA 168 2.45e+01 1f9aA c.26.1.3 31602 1p50A 356 2.52e+01 a.83.1.1 87786 d.128.1.2 87787 1l5jA 865 2.57e+01 a.118.15.1 73592 c.8.2.1 73593 c.83.1.1 73594 4matA 278 2.59e+01 1c24A d.127.1.1 41150 1c24A 263 2.64e+01 1c24A d.127.1.1 41148 2matA 264 2.65e+01 1c24A d.127.1.1 41146 3matA 265 2.65e+01 1c24A d.127.1.1 41149 1ci0A 228 2.71e+01 1ci0A b.45.1.1 25750 1f66C 128 2.74e+01 1aoiC a.22.1.1 16442 1uizA 115 2.74e+01 1mat 264 3.00e+01 1c24A d.127.1.1 41152 1bg0 356 3.01e+01 1qh4A a.83.1.1 18476 d.128.1.2 41211 1m15A 357 3.02e+01 a.83.1.1 78368 d.128.1.2 78369 1lu1 253 3.02e+01 1led b.29.1.1 24116 1im5A 180 3.04e+01 unknown_sccs 66211 1k1zA 78 3.05e+01 b.34.2.1 68026 1tnw 162 3.09e+01 1ncx a.39.1.5 17235 1k82A 268 3.10e+01 a.156.1.2 75866 b.113.1.1 75867 g.39.1.8 75868 1rpxA 230 3.17e+01 1rpxA c.1.2.2 28536 1ii4E 220 3.27e+01 1cvsC b.1.1.4 62404 b.1.1.4 62405 1jqlB 140 3.29e+01 c.37.1.20 63234 1evtC 225 3.30e+01 1cvsC b.1.1.4 21730 b.1.1.4 21731 1cvsC 225 3.31e+01 1cvsC b.1.1.4 21726 b.1.1.4 21727 1ipeA 259 3.38e+01 c.2.1.2 83700 1ggjA 753 3.42e+01 1cf9A c.23.16.3 31457 e.5.1.1 42831 1nrlA 316 3.47e+01 a.123.1.1 -1668 1ezwA 349 3.49e+01 1ezwA c.1.16.3 29558 2ae2A 260 3.49e+01 1bdb c.2.1.2 29945 1c1eL 216 3.51e+01 8fabA b.1.1.1 20238 b.1.1.2 21250 1aym1 285 3.55e+01 1aym1 1vjiA 372 3.56e+01 c.1.4.1 -5197 1d3e1 285 3.56e+01 1aj2 282 3.58e+01 1aj2 c.1.21.1 29665 1furA 467 3.74e+01 1furA a.127.1.1 19403 1iud 380 3.75e+01 4mbp c.94.1.1 35786 1fuoA 467 3.75e+01 1furA a.127.1.1 19411 2fusA 467 3.76e+01 1furA a.127.1.1 19409 1fuqA 472 3.77e+01 1furA a.127.1.1 19405 1ibfA 151 3.90e+01 1yaiA b.1.8.1 62158 1utmA 242 3.93e+01 b.47.1.2 -4184 1j7nA 776 3.94e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1giiA 298 3.97e+01 d.144.1.7 65218 1pwuA 776 3.99e+01 d.92.1.14 -10549 d.92.1.14 -10550 d.166.1.1 -11576