# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkiA 330 2.05e-38 e.3.1.2 84994 1i2sA 282 2.15e-03 e.3.1.1 71104 4blmA 265 5.71e-03 1btl e.3.1.1 42721 1ghpA 258 2.36e-02 1btl e.3.1.1 60520 1iysA 262 3.06e-02 e.3.1.1 -11760 1bza 262 4.13e-02 1btl e.3.1.1 42701 1hzoA 271 7.45e-01 e.3.1.1 71092 1bsg 266 7.48e-01 1btl e.3.1.1 42729 1e25A 282 9.05e-01 1e25A e.3.1.1 42731 1qq5A 253 9.22e-01 1qq5A c.108.1.1 43327 1qq7A 253 9.54e-01 1qq5A c.108.1.1 43329 1pjjA 271 1.12e+00 1fw9A 164 1.20e+00 1fw9A d.190.1.1 60059 1bueA 265 1.33e+00 1btl e.3.1.1 42727 1g6aA 271 1.58e+00 1btl e.3.1.1 42704 1fcyA 236 1.69e+00 2lbd a.123.1.1 19282 2sqcA 631 1.76e+00 2sqcA a.102.4.2 18854 a.102.4.2 18855 1ouvA 273 2.58e+00 a.118.18.1 -1586 1pd21 199 2.86e+00 1pd21 1klxA 138 3.08e+00 a.118.18.1 77440 1odoA 408 3.08e+00 a.104.1.1 -1463 1nnjA 271 3.23e+00 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1top 162 3.31e+00 1ncx a.39.1.5 17223 1n9bA 265 3.92e+00 e.3.1.1 85463 1keaA 221 4.68e+00 a.96.1.2 68491 1j1jA 240 5.17e+00 a.118.16.1 -1637 1uw4B 248 5.64e+00 unknown_sccs -1560 1eguA 731 5.99e+00 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1qwlA 505 6.26e+00 e.5.1.1 -11823 1auiB 169 6.58e+00 1auiB a.39.1.5 17325 1ad4A 266 7.46e+00 1aj2 c.1.21.1 29670 16pk 415 8.44e+00 16pk c.86.1.1 35454 1qmeA 702 8.47e+00 1pmd d.11.1.1 37487 d.11.1.1 37488 d.175.1.1 42560 e.3.1.1 42769 1dgfA 497 8.82e+00 1cf9A e.5.1.1 42782 1uocA 289 8.93e+00 unknown_sccs -7671 1nq7A 244 9.49e+00 a.123.1.1 -1682 1q2wA 308 9.52e+00 b.47.1.4 88355 1oshA 232 9.57e+00 a.123.1.1 -1697 1m7sA 484 9.95e+00 e.5.1.1 74574 1n7oA 721 1.01e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1gpr 162 1.09e+01 1gpr b.84.3.1 28267 1ei5A 520 1.12e+01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1k8kD 300 1.16e+01 d.198.2.1 68309 d.198.2.1 68310 1is1A 185 1.17e+01 d.67.3.1 83704 1iyhA 198 1.17e+01 a.45.1.1 83790 c.47.1.5 83791 1cqqA 180 1.17e+01 1cqqA b.47.1.4 26422 1mtyD 512 1.21e+01 1mhyD a.25.1.2 16742 1ad1A 266 1.29e+01 1aj2 c.1.21.1 29668 1k38A 254 1.37e+01 e.3.1.1 84303 1fm9D 272 1.38e+01 2prgA a.123.1.1 19313 1ezvD 245 1.38e+01 1be3D a.3.1.3 59546 f.23.11.1 59547 1euvA 221 1.38e+01 1euvA d.3.1.7 37133 1ermA 263 1.40e+01 1btl e.3.1.1 42690 1m40A 263 1.45e+01 e.3.1.1 74437 1k82A 268 1.46e+01 a.156.1.2 75866 b.113.1.1 75867 g.39.1.8 75868 1o7eA 276 1.47e+01 e.3.1.1 -11766 1el4A 195 1.49e+01 1ej3A a.39.1.5 59453 1b8dA 164 1.50e+01 1cpcA a.1.1.3 15665 1btl 263 1.53e+01 1btl e.3.1.1 42691 1kktA 511 1.65e+01 a.102.2.1 68687 1uch 230 1.73e+01 1uch d.3.1.6 37129 1dxrL 273 1.90e+01 6prcL f.26.1.1 43431 1d5rA 324 1.97e+01 1d5rA b.7.1.1 23181 c.45.1.1 32697 1qv1A 195 2.00e+01 a.39.1.5 -830 1bu7A 455 2.09e+01 1bu7A a.104.1.1 18937 1mwxA 646 2.11e+01 d.17.4.5 79610 d.175.1.1 79611 e.3.1.1 79612 1np3A 338 2.15e+01 a.100.1.2 85946 c.2.1.6 85947 1kkhA 317 2.17e+01 d.14.1.5 72645 d.58.26.3 72646 1gal 583 2.24e+01 1gpeA c.3.1.2 30386 d.16.1.1 37950 1uwzA 136 2.30e+01 1kb9D 246 2.41e+01 a.3.1.3 77317 f.23.11.1 77318 1q5dA 419 2.43e+01 a.104.1.1 -1454 1d7uA 433 2.46e+01 2dkb c.67.1.4 34439 1omhA 293 2.46e+01 unknown_sccs -10527 1ek8A 185 2.62e+01 1ek8A d.67.3.1 59444 1mp1A 111 2.64e+01 unknown_sccs -996 1o4sA 389 2.75e+01 c.67.1.1 86620 4crxA 322 2.75e+01 4crxA a.60.9.1 18095 d.163.1.1 42155 1k0dA 260 2.82e+01 a.45.1.1 67930 c.47.1.5 67931 1r31A 428 2.86e+01 d.58.20.1 -10108 d.179.1.1 -11716 1e7uA 961 2.91e+01 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1dfoA 417 2.93e+01 1bj4A c.67.1.4 34480 1spgA 144 3.13e+01 1abwA a.1.1.2 15409 1cf9A 753 3.24e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1jf2A 195 3.25e+01 1ej3A a.39.1.5 62930 1dceB 331 3.29e+01 1dceB a.102.4.3 18872 2dkb 433 3.39e+01 2dkb c.67.1.4 34438 1jpzA 473 3.45e+01 a.104.1.1 67069 1qazA 351 3.92e+01 1qazA a.102.3.1 18848 2bltA 361 3.97e+01 1gceA e.3.1.1 42739