# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkiA 330 9.99e-41 e.3.1.2 84994 1i2sA 282 3.54e-03 e.3.1.1 71104 4blmA 265 6.89e-03 1btl e.3.1.1 42721 1ghpA 258 1.99e-02 1btl e.3.1.1 60520 1iysA 262 2.33e-02 e.3.1.1 -11760 1bza 262 2.56e-02 1btl e.3.1.1 42701 1e25A 282 7.71e-02 1e25A e.3.1.1 42731 2sqcA 631 8.81e-02 2sqcA a.102.4.2 18854 a.102.4.2 18855 1g6aA 271 1.16e-01 1btl e.3.1.1 42704 1bueA 265 2.03e-01 1btl e.3.1.1 42727 1qq5A 253 2.71e-01 1qq5A c.108.1.1 43327 1bsg 266 2.78e-01 1btl e.3.1.1 42729 1qq7A 253 3.07e-01 1qq5A c.108.1.1 43329 1ouvA 273 3.51e-01 a.118.18.1 -1586 1n9bA 265 4.56e-01 e.3.1.1 85463 1hzoA 271 5.06e-01 e.3.1.1 71092 1j1jA 240 5.09e-01 a.118.16.1 -1637 1uw4B 248 5.25e-01 unknown_sccs -1560 1auiB 169 5.44e-01 1auiB a.39.1.5 17325 1pd21 199 5.76e-01 1pd21 1uch 230 5.76e-01 1uch d.3.1.6 37129 1klxA 138 8.19e-01 a.118.18.1 77440 1pjjA 271 8.38e-01 1odoA 408 8.68e-01 a.104.1.1 -1463 1oshA 232 1.14e+00 a.123.1.1 -1697 1q5dA 419 1.32e+00 a.104.1.1 -1454 1top 162 1.41e+00 1ncx a.39.1.5 17223 1nnjA 271 1.44e+00 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1gpr 162 1.54e+00 1gpr b.84.3.1 28267 1l1zA 274 1.80e+00 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1keaA 221 1.88e+00 a.96.1.2 68491 1k8kD 300 1.99e+00 d.198.2.1 68309 d.198.2.1 68310 1el4A 195 2.05e+00 1ej3A a.39.1.5 59453 1k38A 254 2.24e+00 e.3.1.1 84303 1ermA 263 2.64e+00 1btl e.3.1.1 42690 1k82A 268 2.72e+00 a.156.1.2 75866 b.113.1.1 75867 g.39.1.8 75868 1jf2A 195 2.82e+00 1ej3A a.39.1.5 62930 1ei5A 520 2.91e+00 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1uocA 289 2.97e+00 unknown_sccs -7671 1omhA 293 2.99e+00 unknown_sccs -10527 1mtyD 512 3.16e+00 1mhyD a.25.1.2 16742 1ad4A 266 3.37e+00 1aj2 c.1.21.1 29670 1btl 263 3.46e+00 1btl e.3.1.1 42691 1euvA 221 3.51e+00 1euvA d.3.1.7 37133 1r2zA 274 3.56e+00 a.156.1.2 -370 b.113.1.1 -5094 g.39.1.8 -12748 1m40A 263 3.59e+00 e.3.1.1 74437 1iyhA 198 3.59e+00 a.45.1.1 83790 c.47.1.5 83791 1regX 122 3.65e+00 1regX d.58.27.1 39406 1kkhA 317 3.97e+00 d.14.1.5 72645 d.58.26.3 72646 1d5rA 324 4.01e+00 1d5rA b.7.1.1 23181 c.45.1.1 32697 1qv1A 195 4.05e+00 a.39.1.5 -830 1mp1A 111 4.17e+00 unknown_sccs -996 1qwlA 505 4.40e+00 e.5.1.1 -11823 1aa7A 158 4.65e+00 1aa7A a.95.1.1 18741 1ad1A 266 5.18e+00 1aj2 c.1.21.1 29668 1ezvD 245 5.20e+00 1be3D a.3.1.3 59546 f.23.11.1 59547 1mldA 314 5.29e+00 2cmd c.2.1.5 30122 d.162.1.1 42089 1e7uA 961 5.43e+00 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1ornA 226 5.61e+00 a.96.1.1 87342 1dgfA 497 5.67e+00 1cf9A e.5.1.1 42782 1o7eA 276 5.70e+00 e.3.1.1 -11766 1e8yA 966 5.73e+00 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1dlyA 164 5.81e+00 1dlyA a.1.1.1 14983 1j0aA 325 6.11e+00 c.79.1.1 83871 1is1A 185 6.25e+00 d.67.3.1 83704 1fcyA 236 6.62e+00 2lbd a.123.1.1 19282 1jjyA 636 6.91e+00 1jjyA 1ne9A 335 7.12e+00 d.108.1.4 -10805 d.108.1.4 -10806 1v93A 296 7.56e+00 c.1.23.1 -5654 1su8A 636 7.69e+00 e.26.1.2 -12015 1kb9D 246 7.70e+00 a.3.1.3 77317 f.23.11.1 77318 1ca1 370 8.10e+00 1ca1 a.124.1.1 19340 b.12.1.3 23648 1e2uA 553 8.15e+00 1e1dA e.26.1.1 43362 1r9dA 787 8.20e+00 1lvfA 110 8.43e+00 a.47.2.1 74280 1gntA 553 8.71e+00 e.26.1.1 70290 1cqqA 180 8.83e+00 1cqqA b.47.1.4 26422 1eguA 731 9.01e+00 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1aj8A 371 9.16e+00 1aj8A a.103.1.1 18900 2ae2A 260 9.25e+00 1bdb c.2.1.2 29945 1h4vB 421 9.35e+00 1adjA c.51.1.1 60624 d.104.1.1 60625 1fm9D 272 9.38e+00 2prgA a.123.1.1 19313 1mo9A 523 9.46e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1m7sA 484 9.54e+00 e.5.1.1 74574 1r5qA 102 9.58e+00 unknown_sccs -965 1mxmA 254 9.64e+00 b.38.1.3 79647 d.58.43.1 79648 f.34.1.1 79649 1dceB 331 9.73e+00 1dceB a.102.4.3 18872 1n7oA 721 9.83e+00 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1erjA 393 1.00e+01 1erjA b.69.4.1 27660 4crxA 322 1.02e+01 4crxA a.60.9.1 18095 d.163.1.1 42155 1uldA 150 1.09e+01 b.29.1.3 -3423 1vjgA 218 1.10e+01 unknown_sccs -6447 1n83A 270 1.10e+01 a.123.1.1 80276 1pbv 195 1.10e+01 1pbv a.118.3.1 19179 2pth 193 1.15e+01 2pth c.56.3.1 33793 1eca 136 1.20e+01 1flp a.1.1.2 15209 1oyeA 1049 1.24e+01 d.58.44.1 87587 d.58.44.1 87588 d.58.44.1 87589 d.58.44.1 87590 d.225.1.1 87591 d.225.1.1 87592 f.35.1.1 87593 f.35.1.1 87594 1qb2A 109 1.24e+01 1qb2A a.36.1.1 17125 5eau 548 1.29e+01 5eat a.102.4.1 18851 a.128.1.3 19443 1r8sE 203 1.33e+01 a.118.3.1 -1579 1nrfA 262 1.34e+01 e.3.1.1 -11780 1mwxA 646 1.38e+01 d.17.4.5 79610 d.175.1.1 79611 e.3.1.1 79612 1kewA 361 1.39e+01 c.2.1.2 68544 1p7gA 222 1.40e+01 a.2.11.1 -108 d.44.1.1 -9742 1qmeA 702 1.41e+01 1pmd d.11.1.1 37487 d.11.1.1 37488 d.175.1.1 42560 e.3.1.1 42769 1rzhL 281 1.42e+01 f.26.1.1 -12215 1m6sA 347 1.42e+01 c.67.1.1 78701 1jg8A 347 1.44e+01 1jg8A c.67.1.1 62946 1abv 134 1.44e+01 1abv a.70.1.1 18317 1fw9A 164 1.47e+01 1fw9A d.190.1.1 60059 1dfmA 223 1.47e+01 1d2iA c.52.1.5 33295 1spgA 144 1.47e+01 1abwA a.1.1.2 15409 1q0rA 298 1.48e+01 unknown_sccs -8330 1j1iA 296 1.51e+01 c.69.1.10 83977 1n62B 809 1.54e+01 d.41.1.1 80092 d.133.1.1 80093 1aisB 200 1.55e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1p5sA 203 1.56e+01 a.40.1.1 -900 1adjA 421 1.59e+01 1adjA c.51.1.1 33188 d.104.1.1 40737 1q44A 326 1.59e+01 c.37.1.5 -7037 1ls6A 295 1.62e+01 c.37.1.5 -7026 1bh9B 89 1.62e+01 1bh9B a.22.1.3 16485 1rec 201 1.63e+01 1rec a.39.1.5 17326 1l8bA 190 1.63e+01 d.86.1.1 73683 1oaiA 59 1.64e+01 a.5.2.3 81255 2gdm 153 1.64e+01 2gdm a.1.1.2 15212 1knwA 425 1.67e+01 b.49.2.3 -4274 c.1.6.1 -5229 1jpzA 473 1.67e+01 a.104.1.1 67069 1ka2A 499 1.71e+01 d.92.1.5 77305 1np3A 338 1.74e+01 a.100.1.2 85946 c.2.1.6 85947 1nowA 507 1.76e+01 c.1.8.6 85936 d.92.2.1 85937 1kb9G 125 1.80e+01 f.27.1.1 77322 1dfoA 417 1.80e+01 1bj4A c.67.1.4 34480 1qazA 351 1.80e+01 1qazA a.102.3.1 18848 1h8dH 260 1.87e+01 5ptp 1ezvF 125 1.88e+01 1be3F f.27.1.1 59550 2cmd 312 1.89e+01 2cmd c.2.1.5 30135 d.162.1.1 42102 1lehA 364 1.90e+01 1bw9A c.2.1.7 30268 c.58.1.1 33916 1ek8A 185 1.93e+01 1ek8A d.67.3.1 59444 1otkA 249 1.97e+01 a.25.1.2 -695 1kl1A 419 1.99e+01 c.67.1.4 72663 1teaA 299 1.99e+01 1brwA 433 2.14e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1qj2B 809 2.15e+01 1qj2B 1ci9A 392 2.21e+01 e.3.1.1 64767 1dxrL 273 2.21e+01 6prcL f.26.1.1 43431 1efnB 152 2.23e+01 1efnB d.102.1.1 40699 1k8kG 151 2.24e+01 a.118.13.1 68313 1au1A 166 2.27e+01 1ifa a.26.1.3 16889 1k8tA 510 2.28e+01 e.41.1.1 68316 1rztA 331 2.29e+01 a.60.6.1 -1023 a.60.12.1 -1030 d.218.1.2 -9807 16pk 415 2.38e+01 16pk c.86.1.1 35454 1qgrA 876 2.49e+01 1qgrA a.118.1.1 19119 1nq7A 244 2.51e+01 a.123.1.1 -1682 1l7yA 94 2.60e+01 d.15.1.6 73676 1ngvA 534 2.60e+01 c.111.1.2 85698 1gal 583 2.62e+01 1gpeA c.3.1.2 30386 d.16.1.1 37950 1ej1A 190 2.65e+01 1ejhA d.86.1.1 40144 1g3mA 294 2.75e+01 c.37.1.5 83268 1wdcB 156 2.77e+01 1wdcB a.39.1.5 17302 1jfbA 404 2.82e+01 a.104.1.1 66624 1ku1A 230 2.82e+01 a.118.3.1 72996 1ax4A 467 2.82e+01 1ax4A c.67.1.2 34391 1fnd 314 2.82e+01 1fnc b.43.4.2 25626 c.25.1.1 31516 1gjnA 153 2.83e+01 a.1.1.2 70191 1qi7A 253 2.85e+01 1qi7A d.165.1.1 42210 1kktA 511 2.86e+01 a.102.2.1 68687 1oe9A 795 2.89e+01 b.34.3.1 -3581 c.37.1.9 -7103 1p2xA 159 2.94e+01 1lvwA 295 2.97e+01 c.68.1.6 84723 2ahjA 206 2.99e+01 2ahjA d.149.1.1 41772 1idrA 136 3.04e+01 1dlyA a.1.1.1 62301 1kk8B 139 3.11e+01 a.39.1.5 77430 1rfzA 168 3.13e+01 unknown_sccs -1206 1hm6A 346 3.14e+01 1avc a.65.1.1 18147 1hs6A 611 3.22e+01 1hs6A a.118.1.7 61233 b.98.1.1 61234 d.92.1.13 61235 1iapA 211 3.23e+01 a.91.1.1 62119 1o69A 394 3.24e+01 c.67.1.4 -8209 1zin 217 3.27e+01 1zin c.37.1.1 31915 g.41.2.1 45178 1h72C 296 3.27e+01 d.14.1.5 60712 d.58.26.1 60713 1f24A 402 3.27e+01 1rom a.104.1.1 18953 1r6wA 322 3.27e+01 c.1.11.2 -5563 d.54.1.1 -9821 1uedA 406 3.28e+01 a.104.1.1 -1459 1fnc 314 3.29e+01 1fnc b.43.4.2 25627 c.25.1.1 31517 1dwtA 153 3.30e+01 1a6m a.1.1.2 15190 1hy0A 466 3.31e+01 1auwA a.127.1.1 61392 1kyqA 274 3.31e+01 c.2.1.11 73281 e.37.1.1 73282 1dpjA 329 3.31e+01 1smrA b.50.1.2 26828 1lfkA 398 3.33e+01 a.104.1.1 77926 1vduA 172 3.34e+01 unknown_sccs -1651 1mun 225 3.37e+01 1mun a.96.1.2 18744 1iu4A 331 3.38e+01 d.3.1.8 71430 1gegA 256 3.39e+01 1ybvA c.2.1.2 29888 1ukkA 142 3.42e+01 d.227.1.1 -11206 1m3qA 317 3.43e+01 a.96.1.3 -1288 d.129.1.2 -11006 1pi1A 185 3.49e+01 unknown_sccs -762 1uwzA 136 3.50e+01 1fthA 122 3.50e+01 d.150.1.2 60028 1cf9A 753 3.50e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1ng6A 148 3.53e+01 a.182.1.1 85670 1gdoA 240 3.54e+01 1gdoA d.153.1.1 41804 1nrgA 261 3.54e+01 b.45.1.1 80694 1h8eA 510 3.55e+01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1o17A 345 3.56e+01 a.46.2.1 80765 c.27.1.1 80766 1uouA 474 3.59e+01 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 1na3A 91 3.67e+01 k.38.1.1 85481 1s4kA 120 3.68e+01 1gmuA 143 3.69e+01 b.107.1.1 65335 d.58.38.1 65336 1n3kA 130 3.69e+01 a.77.1.4 79965 1n00A 321 3.71e+01 a.65.1.1 85241 1que 303 3.72e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1je8A 82 3.73e+01 a.4.6.2 77108 1cpo 299 3.73e+01 1cpo a.39.3.1 17390 a.39.3.1 17391 1vi9A 299 3.75e+01 c.72.1.5 -8393 1fs1B 141 3.75e+01 1vcbB a.157.1.1 19252 d.42.1.1 38664 1go2A 304 3.79e+01 b.43.4.2 76243 c.25.1.1 76244 1squA 155 3.84e+01 unknown_sccs -10229 1div 149 3.86e+01 1div d.99.1.1 40692 d.100.1.1 40693 1fwkA 296 3.89e+01 1fwkA d.14.1.5 37576 d.58.26.1 39398 1ogiA 303 3.96e+01 b.43.4.2 -4042 c.25.1.1 -6587 1nxuA 333 3.96e+01 c.122.1.1 86389