# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkiA 330 1.69e-50 e.3.1.2 84994 1i2sA 282 2.29e-05 e.3.1.1 71104 4blmA 265 8.13e-05 1btl e.3.1.1 42721 1ghpA 258 1.48e-04 1btl e.3.1.1 60520 1bza 262 1.86e-03 1btl e.3.1.1 42701 1iysA 262 2.48e-03 e.3.1.1 -11760 1hzoA 271 9.24e-02 e.3.1.1 71092 1n9bA 265 2.55e-01 e.3.1.1 85463 1bueA 265 2.93e-01 1btl e.3.1.1 42727 1e25A 282 3.52e-01 1e25A e.3.1.1 42731 1bsg 266 3.78e-01 1btl e.3.1.1 42729 1g6aA 271 7.19e-01 1btl e.3.1.1 42704 1ermA 263 8.17e-01 1btl e.3.1.1 42690 1m40A 263 8.80e-01 e.3.1.1 74437 1btl 263 1.30e+00 1btl e.3.1.1 42691 1h8dH 260 1.43e+00 5ptp 1cqqA 180 1.93e+00 1cqqA b.47.1.4 26422 1eu8A 409 2.23e+00 1eu8A c.94.1.1 59502 1furA 467 2.49e+00 1furA a.127.1.1 19403 2tbs 222 2.89e+00 5ptp b.47.1.2 26009 1k82A 268 3.83e+00 a.156.1.2 75866 b.113.1.1 75867 g.39.1.8 75868 1k38A 254 3.93e+00 e.3.1.1 84303 1dceB 331 3.97e+00 1dceB a.102.4.3 18872 1klxA 138 4.11e+00 a.118.18.1 77440 1riqA 465 4.41e+00 unknown_sccs -1295 d.104.1.1 -10769 1oalA 151 4.45e+00 b.1.8.1 86739 4ptp 223 4.77e+00 1hj8A 222 4.91e+00 b.47.1.2 65844 2sqcA 631 5.88e+00 2sqcA a.102.4.2 18854 a.102.4.2 18855 5ptp 223 5.94e+00 5ptp b.47.1.2 25831 1gefA 123 6.49e+00 1gefA c.52.1.18 60465 1o7eA 276 6.52e+00 e.3.1.1 -11766 1ezvD 245 6.92e+00 1be3D a.3.1.3 59546 f.23.11.1 59547 1bj4A 470 7.60e+00 1bj4A c.67.1.4 34479 1jljA 189 7.81e+00 c.57.1.1 63169 1i7wB 151 7.83e+00 1i7wB j.71.1.1 61910 1r6wA 322 7.89e+00 c.1.11.2 -5563 d.54.1.1 -9821 1kb9D 246 8.26e+00 a.3.1.3 77317 f.23.11.1 77318 1vduA 172 8.80e+00 unknown_sccs -1651 1ei5A 520 8.93e+00 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1ihcA 188 9.22e+00 1di6A c.57.1.1 62379 1fhuA 320 9.23e+00 1fhuA c.1.11.2 29234 d.54.1.1 38878 1mwxA 646 9.50e+00 d.17.4.5 79610 d.175.1.1 79611 e.3.1.1 79612 1fo8A 343 1.06e+01 1foaA c.68.1.10 59927 1nrfA 262 1.11e+01 e.3.1.1 -11780 1g61A 228 1.15e+01 1g61A d.126.1.1 41126 1nnjA 271 1.50e+01 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1eg2A 319 1.54e+01 1eg2A c.66.1.11 34249 1a0jA 223 1.58e+01 5ptp b.47.1.2 26002 1ks8A 433 1.62e+01 a.102.1.2 77519 1omzA 293 1.76e+01 c.68.1.15 87093 1jgjA 217 1.84e+01 1c3wA f.13.1.1 62952 1ad1A 266 2.06e+01 1aj2 c.1.21.1 29668 1j7nA 776 2.15e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1l6wA 220 2.21e+01 c.1.10.1 73632 1afrA 345 2.26e+01 1afrA a.25.1.2 16805 1dfoA 417 2.27e+01 1bj4A c.67.1.4 34480 1lehA 364 2.30e+01 1bw9A c.2.1.7 30268 c.58.1.1 33916 1uw4B 248 2.51e+01 unknown_sccs -1560 1pjjA 271 2.58e+01 1kyhA 276 2.59e+01 c.72.1.4 73222 1h2sA 225 2.76e+01 f.13.1.1 76578 1ouvA 273 2.83e+01 a.118.18.1 -1586 1d2eA 397 2.83e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1avsA 90 2.85e+01 1cll a.39.1.5 17226 1colA 204 2.87e+01 1a87 f.1.1.1 43378 1yaiA 151 2.94e+01 1yaiA b.1.8.1 22289 1r72A 211 2.95e+01 unknown_sccs -215 unknown_sccs -5981 1pmmA 466 2.96e+01 c.67.1.6 -8159 1oq9A 363 3.04e+01 a.25.1.2 87257 1bouB 302 3.07e+01 1bouB c.56.6.1 33859 1rv3A 483 3.14e+01 1s83A 223 3.18e+01 b.47.1.2 -4178 1hj9A 226 3.77e+01 b.47.1.2 65845 1rifA 282 3.83e+01 unknown_sccs -7265 1c4kA 730 3.85e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1iqqA 200 3.88e+01 d.124.1.1 66274 1i4wA 353 3.90e+01 c.66.1.24 66028 1sw6A 327 3.93e+01 1sw6A d.211.1.1 19176 1ad4A 266 3.97e+01 1aj2 c.1.21.1 29670