# List of top-scoring protein chains for T0251.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ego 85 1.66e-01 1kte c.47.1.1 32767 1s1hM 132 3.44e-01 1fo5A 85 4.30e-01 1fo5A c.47.1.1 59922 1hyuA 521 1.44e+00 1hyuA c.3.1.5 30547 c.3.1.5 30548 c.47.1.2 32779 c.47.1.2 32780 1ql3A 99 1.79e+00 1ycc a.3.1.1 15822 1c7mA 100 1.83e+00 1ycc a.3.1.1 15830 2pcbB 104 1.88e+00 1ycc a.3.1.1 15869 1wejF 105 1.90e+00 1ycc a.3.1.1 15865 1nhoA 85 1.98e+00 c.47.1.1 -7408 1ry9A 145 2.47e+00 d.198.1.1 -9020 1grx 85 2.48e+00 1kte c.47.1.1 32766 1gxcA 149 2.62e+00 b.26.1.2 70687 1j79A 347 2.68e+00 1j79A c.1.9.4 62675 1xgsA 295 3.08e+00 1bn5 a.4.5.25 16216 d.127.1.1 41153 1m2dA 110 3.21e+00 c.47.1.11 78476 1kp0A 402 3.31e+00 c.55.2.1 72834 d.127.1.1 72835 1ytbA 180 3.83e+00 1ytbA d.129.1.1 41276 d.129.1.1 41277 1tbpA 180 3.84e+00 1ytbA d.129.1.1 41282 d.129.1.1 41283 1jmuG 366 5.87e+00 d.196.1.1 66894 1fn9A 365 7.65e+00 1fn9A d.196.1.1 59894 1htiA 248 8.03e+00 1amk c.1.1.1 28455 1r2rA 248 8.05e+00 c.1.1.1 -5147 1fvpA 231 8.34e+00 1nfp c.1.16.2 29556 1gxrA 337 8.66e+00 b.69.4.1 70722 1gxiE 73 9.05e+00 b.34.4.2 83373 1qdlB 195 9.61e+00 1qdlB c.23.16.1 31437 1gcb 454 9.88e+00 3gcb d.3.1.1 37034 1a6r 471 1.10e+01 3gcb d.3.1.1 37033 1m2aA 110 1.10e+01 c.47.1.11 78472 3gcb 470 1.10e+01 3gcb d.3.1.1 37032 1m2bA 110 1.13e+01 c.47.1.11 78474 1obbA 480 1.13e+01 c.2.1.5 86760 d.162.1.2 86761 1iyxA 432 1.14e+01 c.1.11.1 83815 d.54.1.1 83816 1aol 228 1.27e+01 1aol b.20.1.1 23840 1q4mA 221 1.29e+01 unknown_sccs -1910 1co4A 42 1.34e+01 1co4A g.47.1.1 45347 1quaA 197 1.63e+01 1atlA d.92.1.9 40330 1t43A 277 1.72e+01 1mzkA 139 1.75e+01 b.26.1.2 -3316 1mgtA 174 1.87e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1oepA 432 2.00e+01 c.1.11.1 86918 d.54.1.1 86919 1h75A 81 2.01e+01 1h75A c.47.1.1 60716 1b8tA 192 2.05e+01 1b8tA g.39.1.3 45135 g.39.1.3 45136 g.39.1.3 45137 g.39.1.3 45138 1pse 69 2.09e+01 1pse b.34.4.2 24595 1mjwA 175 2.17e+01 2prd b.40.5.1 25419 1o0pA 104 2.23e+01 d.58.7.1 86535 1s1iY 87 2.26e+01 1tiiC 53 2.28e+01 1tiiC 1rq5A 610 2.29e+01 a.102.1.2 -1327 b.1.18.2 -2711 1ut9A 609 2.29e+01 a.102.1.2 -1326 b.1.18.2 -2710 1lm6A 215 2.30e+01 d.167.1.1 84628 1qcqA 148 2.31e+01 1u9aA d.20.1.1 38329 1s1hH 129 2.33e+01 1lw7A 365 2.42e+01 c.26.1.3 74295 c.37.1.1 74296 1mjz 175 2.46e+01 2prd b.40.5.1 25433 1faj 175 2.46e+01 2prd b.40.5.1 25429 1gzgA 337 2.52e+01 c.1.10.3 70805 1bykA 255 2.52e+01 1bykA c.93.1.1 35706 1mjyA 175 2.53e+01 2prd b.40.5.1 25421 1i40A 175 2.62e+01 b.40.5.1 66024 1im4A 221 2.78e+01 unknown_sccs 62581 1b4kA 337 2.82e+01 1b4kA c.1.10.3 29184 1b24A 188 2.83e+01 1b24A d.95.2.1 40573 d.95.2.1 40574 1g2wA 282 2.85e+01 1daaA e.17.1.1 43284 1daaA 282 2.86e+01 1daaA e.17.1.1 43270 1a0gA 282 2.90e+01 1daaA e.17.1.1 43276 1tpc1 247 2.90e+01 1amk 1tpb1 247 2.90e+01 1amk 1tph1 247 2.93e+01 1amk 1tpwA 247 2.93e+01 1amk c.1.1.1 28449 1tpuA 247 2.95e+01 1amk c.1.1.1 28441 1o94A 729 2.97e+01 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 5daaA 277 2.97e+01 1daaA e.17.1.1 43282 3daaA 277 2.97e+01 1daaA e.17.1.1 43272 1tpvA 247 2.98e+01 1amk c.1.1.1 28443 1dq3A 454 2.99e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1senA 164 3.00e+01 1h1dA 221 3.06e+01 c.66.1.1 83452 1jqeA 292 3.08e+01 c.66.1.19 71789 1j34A 129 3.16e+01 d.169.1.1 84048 1aazA 87 3.21e+01 1aba c.47.1.1 32761 1ce7A 241 3.23e+01 1mrj d.165.1.1 42194 2mllA 241 3.27e+01 1mrj d.165.1.1 42195 1ej6A 1289 3.28e+01 i.7.1.1 45967 1pvmA 184 3.29e+01 d.37.1.1 -9612 d.37.1.1 -9613 unknown_sccs -12799 1kagA 173 3.37e+01 c.37.1.2 72249 1mg9A 106 3.39e+01 d.45.1.2 79092 1nnwA 252 3.40e+01 d.159.1.5 80674 1mjxA 175 3.43e+01 2prd b.40.5.1 25430 1mbxC 106 3.44e+01 d.45.1.2 78929 1af6A 421 3.51e+01 2mprA f.4.3.2 43772 1timA 247 3.56e+01 1amk c.1.1.1 28453 1c53 79 3.68e+01 1c53 a.3.1.1 15801 1a7i 81 3.79e+01 1b8tA g.39.1.3 45143 g.39.1.3 45144 1m8vA 77 3.82e+01 b.38.1.1 78814 2pgd 482 3.83e+01 2pgd a.100.1.1 18778 c.2.1.6 30190 2mprA 427 3.84e+01 2mprA f.4.3.2 43788 1jqdA 292 3.85e+01 c.66.1.19 71787 1r62A 160 3.93e+01 1h641 75 3.93e+01 1jtdB 273 3.96e+01 b.69.5.2 67265 1xad 345 3.97e+01 1cnzA c.77.1.1 35055