# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fo5A 85 2.69e-02 1fo5A c.47.1.1 59922 1egr 85 8.05e-02 1kte c.47.1.1 32765 1ego 85 1.34e-01 1kte c.47.1.1 32767 1sly 618 9.58e-01 1qsaA a.118.5.1 19184 d.2.1.6 36990 1qsaA 618 1.22e+00 1qsaA a.118.5.1 19182 d.2.1.6 36988 1grx 85 1.35e+00 1kte c.47.1.1 32766 1qfnA 85 1.89e+00 1qfnA c.47.1.1 32768 1im4A 221 2.21e+00 unknown_sccs 62581 1kte 105 3.10e+00 1kte c.47.1.1 32771 1ql3A 99 3.98e+00 1ycc a.3.1.1 15822 1t1vA 93 5.52e+00 1h75A 81 6.90e+00 1h75A c.47.1.1 60716 1lm6A 215 7.18e+00 d.167.1.1 84628 1ytbB 180 7.21e+00 1ytbA d.129.1.1 41278 d.129.1.1 41279 1m2dA 110 7.61e+00 c.47.1.11 78476 1jhb 106 7.65e+00 1kte c.47.1.1 32772 1cot 129 8.53e+00 1ycc a.3.1.1 15899 1ytbA 180 8.94e+00 1ytbA d.129.1.1 41276 d.129.1.1 41277 1j0fA 100 9.52e+00 unknown_sccs -7483 1tbaB 180 1.04e+01 1ytbA d.129.1.1 41286 d.129.1.1 41287 1o0pA 104 1.05e+01 d.58.7.1 86535 2pac 82 1.14e+01 451c a.3.1.1 15907 1dd5A 185 1.20e+01 1dd5A d.67.3.1 39564 1co4A 42 1.36e+01 1co4A g.47.1.1 45347 1gp0A 143 1.57e+01 b.64.1.1 70300 1hv8A 367 1.57e+01 1hv8A c.37.1.19 32405 c.37.1.19 32406 1ns5A 155 1.60e+01 c.116.1.3 80705 1e6fA 143 1.61e+01 1e6fA b.64.1.1 59304 1phk 298 1.64e+01 1cdkA d.144.1.7 41635 1jmxA 494 1.66e+01 a.3.1.7 66901 a.3.1.7 66902 b.1.18.14 66903 b.1.18.14 66904 b.61.4.1 66905 1s4nA 348 1.67e+01 unknown_sccs -8262 1r5pA 108 1.75e+01 unknown_sccs -7487 3daaA 277 1.92e+01 1daaA e.17.1.1 43272 1f37A 110 1.93e+01 1f37A c.47.1.11 33088 1daaA 282 1.97e+01 1daaA e.17.1.1 43270 1ry9A 145 1.98e+01 d.198.1.1 -9020 2dabA 282 2.07e+01 1daaA e.17.1.1 43274 3nodB 423 2.22e+01 1nseA d.174.1.1 42513 1s1hM 132 2.25e+01 1xgsA 295 2.34e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1m2bA 110 2.38e+01 c.47.1.11 78474 1kriA 186 2.48e+01 b.29.1.14 72897 1gzgA 337 2.58e+01 c.1.10.3 70805 1aba 87 2.79e+01 1aba c.47.1.1 32760 2gar 212 2.88e+01 2gar c.65.1.1 34161 1j34A 129 2.93e+01 d.169.1.1 84048 1v5mA 136 2.98e+01 1ac0 108 3.03e+01 1kum b.3.1.1 22526 1b8tA 192 3.05e+01 1b8tA g.39.1.3 45135 g.39.1.3 45136 g.39.1.3 45137 g.39.1.3 45138 1m2aA 110 3.29e+01 c.47.1.11 78472 351c 82 3.32e+01 451c a.3.1.1 15905 1itkA 731 3.34e+01 a.93.1.3 71417 a.93.1.3 71418 1a3c 181 3.37e+01 1a3c c.61.1.1 34095 1f7tA 122 3.56e+01 1f7lA d.150.1.2 59667 1vsd 152 3.63e+01 1cxqA c.55.3.2 33625 1acz 108 3.63e+01 1kum b.3.1.1 22524 1qdlB 195 3.86e+01 1qdlB c.23.16.1 31437 1cfyA 143 3.87e+01 1cof d.109.1.2 40858