(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0251 NP_374059, Staphylococcus aureus subsp. aureus N315
                 10        20        30          40        50        60
                 |         |         |           |         |         |
   1 ...MVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNIS..FKYTYIDITKDNDNLTDHDLQF
   2 ...MVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNIS..FKYTYIDITKDNDNLTDHDLQF
   3 hvsVVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNIS..FKYTYIDITKDNDNLTDHDLQF
   4 hvsVIVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNIS..FKYTYIDITKDNDNLTDHDLQF
   5 kisVVVYGAEVVCASCVNAPTSIDTYQWLQALLLRKFPQHH..FEFTYIDIRNDTENLTDHDMQF
   6 ...MQVYGTKVICASCVGMPSSTETFEWLQAAIGRKYEGQEnkFNFEYIDFQEEQED--ADKKAF
   7 mvnVQVYGTKVICASCVGMPSSTETFEWLQAAIGRKYEGQEnkFNFEYIDFQEEQED--EDKKAF
   8 mvnVQVYGTKVICASCVGMPSSTETFEWLQAAIGRKYEGQEnkFNFEYIDFQEEQED--EEKKAF
   9 mvnVQVYGTKVICASCVGMPSSTETFEWLQAAIGRKYEGQEnkFNFEYIDFQEEQED--ENKKAF
  10 mvnVQVYGTKVICASCVGMPSSTETFEWLQAAIGRKYEGQEnkFNFEYIDFQEXQED--EEKKAF
  11 eakLYVYGSTTICASCVGAPSSKETEEWLRAAIGRKFSGQP..FVVEYVDIFNPPNETALADMA-
  12 eakLYVYGSTTICASCVGAPSSKETEEWLRAAIGRKFSGQP..FVVEYVDIFNPPNEKALADMA-
  13 eakLYVYGSTTICASCVGAPSSKETEEWLRAAIGRKFSGQP..FVVEYVDIFNPPNEKALADMA-
  14 pvmLSVYGAENVCASCVNMPTAKDTYEWLEAALKRKYPNQP..FEMQYIDIHEPPDN--EHAKEL
  15 eakLYVYGSTTICASCVGAPSSKETEEWLRAAIGRKFSGQP..FVVEYVDIFNPPNEAALADMA-
  16 kimITVYGSKQICASCVGAPGSKDTYEWLQAAIGRKYVVDM..VDYTYIDINEPQKELIH--QEF
  17 lieVTVFGAEEKCASCIHLPSAKETMEWLEAAVKRKYPEHN..FRFRYVDINKVAEK---KDQAY
  18 me.IKVYGAAQTCPSCVGAPSSEETYSWLQAVLGRKYET-A..LTFEYVDF--EAAPVED---EW


              70        80        90        100      
              |         |         |          |      
   1 IERIEQDELFYPLITMNDEYVADGYIQTKQITRFI.DQKLVNE....
   2 IERIEQDELFYPLITMNDEYVADGYIQTKQITRFI.DQKLVNE....
   3 IERIEQDELFYPLITMNDEYVADGYIQTKQITRFI.DQKLVNE....
   4 IERIEQDELFYPLITMNDEYVADGYIQTKQITRFI.DQKLVNE....
   5 IERINEDELFYPLVTMNDEYVADGYIQYKQITRFI.KSYFTM-....
   6 AERIVEEDLFYPVVLVNGEIVGEGNPRLKDVYEEI.EKYL---....
   7 AERVVEEDLFYPVVLVNGEIVGEGNPRLKDVYEEI.EKYL---....
   8 AERVVEEDLFYPVVLVNGEIVGEGNPRLKDVYEEI.EKYL---....
   9 AERVVEEDLFYPVVLVNGEIVGEGNPRLKDVYEEI.EKYL---....
  10 AERVVEEDLFYPVVLVNGEIVEEGNPRLKDVYEEI.EKYL---....
  11 -NKIVEEDYMYPVIVVDGEIIAEGNPRLKDIYQVMtDRGYLATm...
  12 -NKIVEEDYMYPVIVVDGEIIAEGNPRLKDIYQVMtDRGYLATm...
  13 -NKIVEEDYMYPVIVVDDEIIAEGNPRLKDIYQVMtDRGYLATm...
  14 AEKIRNDEYFYPLVLVEDKIVGEGNPKLKDVYEEM.EKHGYTEnr..
  15 -NKIVDEDYMYPVIVVDGEIIAEGNPRLKDIYQVMtDRGYLATm...
  16 INEMMEEDMFYPIIFINDKIVAEGIPTLKPIYRTL.DDLGLPLvn..
  17 ADAILSDEYMYPLVVIEDEVVAEGNPRLKDVYVKI.DAM----....
  18 ITALQDDVYFYPLVLLDGEMVDEGYVQLKKITQAI.DRRLEKTape.