# List of top-scoring protein chains for T0251.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ego 85 1.78e-01 1kte c.47.1.1 32767 1s1hM 132 4.65e-01 1fo5A 85 7.08e-01 1fo5A c.47.1.1 59922 1ql3A 99 7.42e-01 1ycc a.3.1.1 15822 1c7mA 100 7.54e-01 1ycc a.3.1.1 15830 1hyuA 521 1.13e+00 1hyuA c.3.1.5 30547 c.3.1.5 30548 c.47.1.2 32779 c.47.1.2 32780 1ry9A 145 2.29e+00 d.198.1.1 -9020 1grx 85 2.30e+00 1kte c.47.1.1 32766 1gxcA 149 2.46e+00 b.26.1.2 70687 1ytbA 180 2.59e+00 1ytbA d.129.1.1 41276 d.129.1.1 41277 1tbpA 180 2.59e+00 1ytbA d.129.1.1 41282 d.129.1.1 41283 1gcb 454 3.48e+00 3gcb d.3.1.1 37034 1xgsA 295 3.63e+00 1bn5 a.4.5.25 16216 d.127.1.1 41153 2pcbB 104 3.70e+00 1ycc a.3.1.1 15869 1wejF 105 3.73e+00 1ycc a.3.1.1 15865 3gcb 470 3.82e+00 3gcb d.3.1.1 37032 1a6r 471 3.82e+00 3gcb d.3.1.1 37033 1nhoA 85 3.87e+00 c.47.1.1 -7408 1m2dA 110 4.20e+00 c.47.1.11 78476 1fvpA 231 6.14e+00 1nfp c.1.16.2 29556 1j79A 347 6.61e+00 1j79A c.1.9.4 62675 1kp0A 402 7.10e+00 c.55.2.1 72834 d.127.1.1 72835 1gxrA 337 7.93e+00 b.69.4.1 70722 1jmuG 366 9.20e+00 d.196.1.1 66894 1fn9A 365 1.07e+01 1fn9A d.196.1.1 59894 1htiA 248 1.24e+01 1amk c.1.1.1 28455 1r2rA 248 1.24e+01 c.1.1.1 -5147 1dq3A 454 1.25e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1obbA 480 1.28e+01 c.2.1.5 86760 d.162.1.2 86761 1m2aA 110 1.31e+01 c.47.1.11 78472 1m2bA 110 1.33e+01 c.47.1.11 78474 1qdlB 195 1.36e+01 1qdlB c.23.16.1 31437 1iyxA 432 1.58e+01 c.1.11.1 83815 d.54.1.1 83816 1q4mA 221 1.65e+01 unknown_sccs -1910 1mgtA 174 1.69e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1co4A 42 1.72e+01 1co4A g.47.1.1 45347 1gxiE 73 1.80e+01 b.34.4.2 83373 1aol 228 1.85e+01 1aol b.20.1.1 23840 1quaA 197 1.94e+01 1atlA d.92.1.9 40330 1mzkA 139 1.95e+01 b.26.1.2 -3316 1s1hH 129 2.00e+01 2mprA 427 2.02e+01 2mprA f.4.3.2 43788 1ut9A 609 2.18e+01 a.102.1.2 -1326 b.1.18.2 -2710 1rq5A 610 2.18e+01 a.102.1.2 -1327 b.1.18.2 -2711 1mjwA 175 2.20e+01 2prd b.40.5.1 25419 1af6A 421 2.24e+01 2mprA f.4.3.2 43772 1oepA 432 2.27e+01 c.1.11.1 86918 d.54.1.1 86919 1m8vA 77 2.31e+01 b.38.1.1 78814 1qcqA 148 2.35e+01 1u9aA d.20.1.1 38329 1h641 75 2.39e+01 1mjz 175 2.46e+01 2prd b.40.5.1 25433 1faj 175 2.47e+01 2prd b.40.5.1 25429 1mjyA 175 2.48e+01 2prd b.40.5.1 25421 1h75A 81 2.54e+01 1h75A c.47.1.1 60716 1i40A 175 2.58e+01 b.40.5.1 66024 1lw7A 365 2.66e+01 c.26.1.3 74295 c.37.1.1 74296 1bykA 255 2.68e+01 1bykA c.93.1.1 35706 1b8tA 192 2.77e+01 1b8tA g.39.1.3 45135 g.39.1.3 45136 g.39.1.3 45137 g.39.1.3 45138 1s1iY 87 2.77e+01 1s7zA 117 2.81e+01 unknown_sccs -344 1ej6A 1289 2.93e+01 i.7.1.1 45967 1pse 69 3.02e+01 1pse b.34.4.2 24595 1aazA 87 3.19e+01 1aba c.47.1.1 32761 1im4A 221 3.23e+01 unknown_sccs 62581 1tiiC 53 3.24e+01 1tiiC 1t43A 277 3.27e+01 1o0pA 104 3.31e+01 d.58.7.1 86535 1m0wA 491 3.33e+01 c.30.1.4 78363 d.142.1.6 78364 1j34A 129 3.33e+01 d.169.1.1 84048 1mjxA 175 3.36e+01 2prd b.40.5.1 25430 1ku9A 152 3.52e+01 a.4.5.36 77544 1i9cA 137 3.54e+01 c.23.6.1 71136 1o94A 729 3.65e+01 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 1h1dA 221 3.72e+01 c.66.1.1 83452 1eu8A 409 3.75e+01 1eu8A c.94.1.1 59502 1lm6A 215 3.86e+01 d.167.1.1 84628 1a8h 500 3.89e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1jtdB 273 3.89e+01 b.69.5.2 67265