# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1grx 85 7.74e-03 1kte c.47.1.1 32766 1t1vA 93 1.80e-02 1ns5A 155 2.28e-02 c.116.1.3 80705 1kte 105 3.31e-02 1kte c.47.1.1 32771 1j0fA 100 1.78e-01 unknown_sccs -7483 1thx 115 5.66e-01 1thx c.47.1.1 32732 1m4jA 142 6.91e-01 d.109.1.2 78602 1qipA 183 8.41e-01 1qipA d.32.1.1 38470 1r5pA 108 8.79e-01 unknown_sccs -7487 1r26A 125 9.48e-01 c.47.1.1 -7389 1n71A 180 1.05e+00 d.108.1.1 85370 1iloA 77 1.31e+00 c.47.1.1 66205 1sra 151 1.49e+00 1sra a.39.1.3 17190 1vhxA 150 1.97e+00 unknown_sccs -7663 1aba 87 2.00e+00 1aba c.47.1.1 32760 1vjqA 79 2.20e+00 unknown_sccs -13478 1e6bA 221 2.39e+00 1e6bA a.45.1.1 59294 c.47.1.5 59295 1h9dB 134 2.98e+00 2jhbA b.54.1.1 60822 1j9bA 141 3.30e+00 c.47.1.12 66459 1dzfA 215 3.92e+00 1dzfA c.52.3.1 33344 d.78.1.1 39753 1fw1A 216 4.38e+00 a.45.1.1 60051 c.47.1.5 60052 1xgsA 295 4.60e+00 1bn5 a.4.5.25 16216 d.127.1.1 41153 1k3yA 221 4.85e+00 a.45.1.1 77245 c.47.1.5 77246 1k0mA 241 5.07e+00 a.45.1.1 67949 c.47.1.5 67950 1f3aA 222 5.67e+00 1pgtA a.45.1.1 17701 c.47.1.5 32995 1s4nA 348 5.76e+00 unknown_sccs -8262 1ef1C 90 7.94e+00 1ef1C a.137.5.1 19642 1qstA 160 8.47e+00 1yghA d.108.1.1 40804 1nycA 111 8.88e+00 unknown_sccs -4522 1giqA 413 9.10e+00 d.166.1.1 76224 d.166.1.1 76225 1mkyA 439 9.44e+00 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 1fp1D 372 9.47e+00 1fpqA a.4.5.29 59939 c.66.1.12 59940 1uzcA 71 9.77e+00 a.159.2.1 -339 1m2dA 110 9.81e+00 c.47.1.11 78476 1sjyA 159 1.00e+01 d.113.1.1 -10908 1cf2O 337 1.01e+01 1b7gO c.2.1.3 29994 d.81.1.1 39909 1s96A 219 1.07e+01 c.37.1.1 -6972 1f37A 110 1.10e+01 1f37A c.47.1.11 33088 1sk4A 163 1.15e+01 1oyjA 231 1.15e+01 a.45.1.1 87597 c.47.1.5 87598 1dmhA 311 1.17e+01 1dmhA b.3.6.1 22633 1i50F 155 1.19e+01 d.78.1.2 61760 1mszA 86 1.22e+01 d.68.7.1 79428 1gp6A 356 1.24e+01 b.82.2.1 65441 1f9mA 112 1.28e+01 1erv c.47.1.1 32736 1kamA 194 1.29e+01 c.26.1.3 72254 1i4mA 108 1.36e+01 d.6.1.1 66025 1pbjA 125 1.37e+01 d.37.1.1 -9608 d.37.1.1 -9609 2trxA 108 1.45e+01 1thx c.47.1.1 32719 1e87A 118 1.45e+01 1b6e d.169.1.1 42327 1pujA 282 1.45e+01 c.37.1.8 88294 1eu8A 409 1.52e+01 1eu8A c.94.1.1 59502 1orrA 347 1.53e+01 c.2.1.2 -5776 1qamA 244 1.57e+01 2ercA c.66.1.24 34220 1bymA 97 1.61e+01 1bi0 b.34.1.2 24458 1nb9A 147 1.64e+01 b.43.5.1 85515 2ae2A 260 1.67e+01 1bdb c.2.1.2 29945 1fzqA 181 1.69e+01 1hurA c.37.1.8 32060 1bxyA 60 1.72e+01 1bxyA d.59.1.1 39525 1h75A 81 1.75e+01 1h75A c.47.1.1 60716 1ip9A 85 1.82e+01 1ip9A d.15.2.2 62638 1sqsA 242 1.92e+01 unknown_sccs -6433 1qsaA 618 1.92e+01 1qsaA a.118.5.1 19182 d.2.1.6 36988 1j08A 226 1.93e+01 c.47.1.2 83855 c.47.1.2 83856 1ahsA 126 2.00e+01 1ahsA b.19.1.1 23794 1ksiA 642 2.05e+01 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 1vkiA 181 2.07e+01 1sly 618 2.07e+01 1qsaA a.118.5.1 19184 d.2.1.6 36990 1am2 199 2.18e+01 1am2 b.86.1.2 28381 1a4iA 301 2.20e+01 1a4iA c.2.1.7 30278 c.58.1.2 33926 1ci9A 392 2.27e+01 e.3.1.1 64767 1dk8A 147 2.30e+01 1agrE a.91.1.1 18548 119l 164 2.33e+01 1l92 d.2.1.3 36622 1b0uA 262 2.37e+01 1b0uA c.37.1.12 32370 1tig 94 2.38e+01 1tig d.68.1.1 39566 1a8y 367 2.47e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1sedA 117 2.49e+01 1erv 105 2.56e+01 1erv c.47.1.1 32743 1faaA 124 2.61e+01 1erv c.47.1.1 32738 3chbD 104 2.82e+01 3chbD b.40.2.1 24970 1phk 298 2.89e+01 1cdkA d.144.1.7 41635 1q4mA 221 2.89e+01 unknown_sccs -1910 1p36A 164 2.93e+01 d.2.1.3 -8840 1h98A 78 2.97e+01 d.58.1.2 65743 1vk9A 151 2.98e+01 1jtkA 136 3.06e+01 c.97.1.1 71862 1zfjA 491 3.06e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1ne6A 283 3.16e+01 b.82.3.2 -4918 b.82.3.2 -4919 1tq8A 163 3.20e+01 1ukmB 128 3.21e+01 d.169.1.1 -11625 1m4iA 181 3.26e+01 d.108.1.1 74457 1otvA 259 3.26e+01 unknown_sccs -1915 1a1x 108 3.31e+01 1a1x b.63.1.1 27514 1lj8A 493 3.35e+01 a.100.1.9 78033 c.2.1.6 78034 1jl3A 139 3.38e+01 c.44.1.1 66826 1v3vA 333 3.41e+01 1j24A 143 3.45e+01 c.52.1.20 84008 1hb6A 86 3.48e+01 a.11.1.1 70959 1f4pA 147 3.51e+01 5nul c.23.5.1 59651 1pxvA 183 3.52e+01 d.3.1.1 -8881 1r5tA 142 3.53e+01 1yrnB 83 3.54e+01 1akhB a.4.1.1 15986 1k61A 60 3.56e+01 a.4.1.1 77270 1h1yA 228 3.58e+01 c.1.2.2 76506 1gnuA 117 3.63e+01 d.15.1.3 65403 1php 394 3.66e+01 16pk c.86.1.1 35452 1usuB 170 3.69e+01 unknown_sccs -10492 1fv5A 36 3.75e+01 1fv5A g.37.1.2 45075 1f3vA 179 3.79e+01 1f3vA d.58.22.1 39382 1s4qA 228 3.81e+01 c.37.1.1 -6975 1g5hA 454 3.82e+01 1g5hA c.51.1.1 60270 d.104.1.1 60271 1j2mA 99 3.83e+01 a.165.1.1 84018 1uw4A 91 3.84e+01 unknown_sccs -10038 1q7lB 88 3.84e+01 1cnzA 363 3.85e+01 1cnzA c.77.1.1 35061 1que 303 3.92e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1j6rA 214 3.93e+01 d.173.1.2 71598