# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1grx 85 5.39e-01 1kte c.47.1.1 32766 1a8y 367 9.46e-01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1qsaA 618 1.04e+00 1qsaA a.118.5.1 19182 d.2.1.6 36988 1dq3A 454 1.17e+00 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1sly 618 1.25e+00 1qsaA a.118.5.1 19184 d.2.1.6 36990 1h75A 81 1.41e+00 1h75A c.47.1.1 60716 1q4mA 221 1.58e+00 unknown_sccs -1910 1kte 105 2.44e+00 1kte c.47.1.1 32771 1r5pA 108 3.25e+00 unknown_sccs -7487 1s4nA 348 3.37e+00 unknown_sccs -8262 1mvoA 136 3.50e+00 c.23.1.1 79513 1ry9A 145 3.99e+00 d.198.1.1 -9020 1gcb 454 4.59e+00 3gcb d.3.1.1 37034 1o0pA 104 5.94e+00 d.58.7.1 86535 1j0fA 100 5.94e+00 unknown_sccs -7483 3gcb 470 6.77e+00 3gcb d.3.1.1 37032 1aba 87 7.55e+00 1aba c.47.1.1 32760 1orrA 347 7.63e+00 c.2.1.2 -5776 1eu8A 409 8.31e+00 1eu8A c.94.1.1 59502 1ut9A 609 8.63e+00 a.102.1.2 -1326 b.1.18.2 -2710 1nmoA 247 9.44e+00 unknown_sccs -8746 1vjqA 79 9.60e+00 unknown_sccs -13478 1t1vA 93 1.02e+01 1eejA 216 1.03e+01 1eejA c.47.1.9 33057 d.17.3.1 38071 1iyxA 432 1.04e+01 c.1.11.1 83815 d.54.1.1 83816 1of8A 370 1.53e+01 c.1.10.4 -5508 1m2dA 110 1.73e+01 c.47.1.11 78476 1axdA 209 1.77e+01 1gnwA a.45.1.1 17730 c.47.1.5 33024 1cot 129 1.83e+01 1ycc a.3.1.1 15899 1mvcA 240 1.97e+01 a.123.1.1 79499 1mgtA 174 1.98e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1babA 143 2.04e+01 1abwA a.1.1.2 15235 1xgsA 295 2.31e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 3daaA 277 2.60e+01 1daaA e.17.1.1 43272 1jalA 363 2.62e+01 c.37.1.8 84138 d.15.10.2 84139 1nycA 111 2.62e+01 unknown_sccs -4522 1bn7A 294 2.65e+01 1bn6A c.69.1.8 34677 1oq9A 363 2.68e+01 a.25.1.2 87257 1lm6A 215 2.72e+01 d.167.1.1 84628 1jx4A 352 2.75e+01 unknown_sccs -10188 unknown_sccs -11898 1sra 151 2.85e+01 1sra a.39.1.3 17190 1fgyA 127 2.87e+01 1faoA b.55.1.1 26976 1n8vA 112 2.94e+01 unknown_sccs 85457 1vsd 152 3.08e+01 1cxqA c.55.3.2 33625 1jtdB 273 3.29e+01 b.69.5.2 67265 1o1yA 239 3.30e+01 c.23.16.1 86554 1j79A 347 3.33e+01 1j79A c.1.9.4 62675 1irdA 141 3.40e+01 a.1.1.2 66286 1v95A 130 3.42e+01 1s1hM 132 3.55e+01 1g5cA 170 3.56e+01 1g5cA c.53.2.1 60264 2tpsA 227 3.56e+01 2tpsA c.1.3.1 28591 1cxqA 162 3.77e+01 1cxqA c.55.3.2 33621 1qhtA 775 3.78e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1io2A 213 3.90e+01 1ekeA c.55.3.1 62612