# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1grx 85 1.04e-01 1kte c.47.1.1 32766 1ksiA 642 1.19e-01 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 1s4nA 348 2.52e-01 unknown_sccs -8262 1gcb 454 3.28e-01 3gcb d.3.1.1 37034 3gcb 470 3.67e-01 3gcb d.3.1.1 37032 1kte 105 5.78e-01 1kte c.47.1.1 32771 1o94A 729 9.54e-01 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 1djnA 729 1.02e+00 2tmdA c.1.4.1 28612 c.3.1.1 30313 c.4.1.1 30598 2tmdA 729 1.04e+00 2tmdA c.1.4.1 28616 c.3.1.1 30317 c.4.1.1 30602 1k3yA 221 1.20e+00 a.45.1.1 77245 c.47.1.5 77246 1j3vA 289 1.59e+00 a.100.1.1 -1303 c.2.1.6 -5947 1bykA 255 1.61e+00 1bykA c.93.1.1 35706 1eg5A 384 1.81e+00 1ecxA c.67.1.3 34429 1eu8A 409 2.16e+00 1eu8A c.94.1.1 59502 1dp4A 435 2.19e+00 1dp4A c.93.1.1 35710 1iyxA 432 2.77e+00 c.1.11.1 83815 d.54.1.1 83816 1b1cA 181 3.36e+00 1amoA c.23.5.2 31212 1zfjA 491 3.42e+00 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1hurA 180 3.51e+00 1hurA c.37.1.8 32052 1o3yA 166 3.74e+00 c.37.1.8 86618 1m2dA 110 4.03e+00 c.47.1.11 78476 1co4A 42 4.58e+00 1co4A g.47.1.1 45347 1f37A 110 4.99e+00 1f37A c.47.1.11 33088 1r8sA 164 5.36e+00 c.37.1.8 -7082 1a2vA 655 5.56e+00 1a2vA b.30.2.1 24416 d.17.2.1 38059 d.17.2.1 38060 1pb1A 416 5.75e+00 c.77.1.1 88014 1r5pA 108 5.90e+00 unknown_sccs -7487 1h75A 81 6.37e+00 1h75A c.47.1.1 60716 1ajsA 412 6.48e+00 1ajsA c.67.1.1 34276 1jx4A 352 6.80e+00 unknown_sccs -10188 unknown_sccs -11898 1f3aA 222 6.95e+00 1pgtA a.45.1.1 17701 c.47.1.5 32995 1r0rI 51 7.10e+00 unknown_sccs -12572 1iso 416 7.18e+00 1iso c.77.1.1 35065 1igwA 434 8.00e+00 c.1.12.7 62370 1sgpI 51 8.40e+00 2ovo unknown_sccs 44678 1xgsA 295 8.56e+00 1bn5 a.4.5.25 16216 d.127.1.1 41153 1fn9A 365 8.79e+00 1fn9A d.196.1.1 59894 1jqeA 292 8.95e+00 c.66.1.19 71789 1thx 115 1.10e+01 1thx c.47.1.1 32732 2tpsA 227 1.12e+01 2tpsA c.1.3.1 28591 1r5tA 142 1.16e+01 1sb8A 352 1.17e+01 1cl8A 276 1.17e+01 1ckqA c.52.1.1 33230 1s6yA 450 1.20e+01 1ucdA 190 1.21e+01 1ucaA 190 1.23e+01 d.124.1.1 88462 1h2wA 710 1.24e+01 b.69.7.1 76596 c.69.1.4 76597 1qfmA 710 1.24e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1ry9A 145 1.30e+01 d.198.1.1 -9020 1exbA 332 1.33e+01 1qrqA c.1.7.1 28666 1r26A 125 1.33e+01 c.47.1.1 -7389 1fsz 372 1.34e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1pzxA 289 1.37e+01 c.119.1.1 -8623 4enl 436 1.39e+01 4enl c.1.11.1 29202 d.54.1.1 38846 1hufA 140 1.41e+01 1hufA d.195.1.1 61272 1ja1A 622 1.44e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1t1vA 93 1.47e+01 1ni3A 392 1.50e+01 c.37.1.8 80531 d.15.10.2 80532 1bk7A 190 1.52e+01 1bk7A d.124.1.1 41121 1d3yA 301 1.60e+01 1d3yA e.12.1.1 43252 1whtA 256 1.63e+01 1ivyA c.69.1.5 34646 1jfuA 186 1.66e+01 c.47.1.10 62940 1ahxA 396 1.68e+01 1ajsA c.67.1.1 34293 1jndA 420 1.76e+01 c.1.8.5 71757 d.26.3.1 71758 1r4aA 165 1.77e+01 c.37.1.8 -7089 1whsA 255 1.77e+01 1ivyA c.69.1.5 34649 1orrA 347 1.79e+01 c.2.1.2 -5776 1dd9A 338 1.87e+01 1dd9A e.13.1.1 43254 1j6oA 268 1.87e+01 c.1.9.12 77088 1vjgA 218 1.90e+01 unknown_sccs -6447 1ayl 541 1.96e+01 1ayl c.91.1.1 64718 c.109.1.1 64719 1adoA 363 1.97e+01 1fbaA c.1.10.1 29124 1jvwA 167 2.01e+01 d.26.1.1 71907 1hdr 244 2.03e+01 1dhr c.2.1.2 29837 1exqA 154 2.07e+01 1b9dA c.55.3.2 33646 1uptA 171 2.07e+01 c.37.1.8 -7085 1m4jA 142 2.09e+01 d.109.1.2 78602 1eudA 311 2.13e+01 2scuA c.2.1.8 30312 c.23.4.1 31140 1sra 151 2.23e+01 1sra a.39.1.3 17190 1quqB 121 2.24e+01 1quqB b.40.4.3 25305 1p3wA 404 2.34e+01 c.67.1.3 87752 1o0pA 104 2.35e+01 d.58.7.1 86535 1mp8A 281 2.54e+01 d.144.1.7 -11361 1pvyA 227 2.57e+01 d.115.1.2 -10937 1go3E 187 2.62e+01 b.40.4.5 83054 d.230.1.1 83055 1vid 221 2.69e+01 1vid c.66.1.1 34178 1uouA 474 2.70e+01 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 1s1hM 132 2.70e+01 1dhr 241 2.77e+01 1dhr c.2.1.2 29832 1nhs 447 2.79e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1sxrA 183 2.79e+01 1j08A 226 2.84e+01 c.47.1.2 83855 c.47.1.2 83856 1j0fA 100 2.92e+01 unknown_sccs -7483 1nhp 447 2.95e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1oneA 436 2.95e+01 4enl c.1.11.1 29200 d.54.1.1 38844 1kamA 194 3.00e+01 c.26.1.3 72254 1uxoA 192 3.00e+01 1rvkA 382 3.07e+01 c.1.11.2 -5568 d.54.1.1 -9826 1vhxA 150 3.09e+01 unknown_sccs -7663 1j79A 347 3.09e+01 1j79A c.1.9.4 62675 1mo0A 275 3.14e+01 c.1.1.1 79329 1nu0A 138 3.15e+01 unknown_sccs -7658 1aba 87 3.25e+01 1aba c.47.1.1 32760 1dcfA 136 3.27e+01 1dcfA c.23.1.2 31124 1qnaA 200 3.50e+01 1ytbA d.129.1.1 41226 d.129.1.1 41227 1jtdB 273 3.51e+01 b.69.5.2 67265 1oaa 259 3.52e+01 1oaa c.2.1.2 29829 1kkoA 413 3.54e+01 c.1.11.2 68675 d.54.1.1 68676 1phk 298 3.59e+01 1cdkA d.144.1.7 41635 1rkuA 206 3.62e+01 unknown_sccs -6823 1f2dA 341 3.66e+01 1f2dA c.79.1.1 35298 1pvmA 184 3.75e+01 d.37.1.1 -9612 d.37.1.1 -9613 unknown_sccs -12799 1f89A 291 3.81e+01 d.160.1.1 64988 1j8fA 323 3.82e+01 1j8fA c.31.1.5 62738 1ut9A 609 3.89e+01 a.102.1.2 -1326 b.1.18.2 -2710