# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1k3yA 221 1.46e-01 a.45.1.1 77245 c.47.1.5 77246 1gcb 454 1.75e-01 3gcb d.3.1.1 37034 1grx 85 2.14e-01 1kte c.47.1.1 32766 1ksiA 642 2.15e-01 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 1s4nA 348 2.25e-01 unknown_sccs -8262 3gcb 470 2.61e-01 3gcb d.3.1.1 37032 1f37A 110 2.61e-01 1f37A c.47.1.11 33088 1zfjA 491 3.82e-01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1kte 105 3.84e-01 1kte c.47.1.1 32771 1m2dA 110 4.42e-01 c.47.1.11 78476 1pvyA 227 4.99e-01 d.115.1.2 -10937 1r8sA 164 5.66e-01 c.37.1.8 -7082 1f3aA 222 6.76e-01 1pgtA a.45.1.1 17701 c.47.1.5 32995 1r5tA 142 9.74e-01 1o3yA 166 1.26e+00 c.37.1.8 86618 1dp4A 435 1.56e+00 1dp4A c.93.1.1 35710 1djnA 729 1.59e+00 2tmdA c.1.4.1 28612 c.3.1.1 30313 c.4.1.1 30598 2tmdA 729 1.63e+00 2tmdA c.1.4.1 28616 c.3.1.1 30317 c.4.1.1 30602 1o94A 729 1.66e+00 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 1eu8A 409 1.73e+00 1eu8A c.94.1.1 59502 1xgsA 295 1.99e+00 1bn5 a.4.5.25 16216 d.127.1.1 41153 1thx 115 2.06e+00 1thx c.47.1.1 32732 1hurA 180 2.24e+00 1hurA c.37.1.8 32052 1r26A 125 2.64e+00 c.47.1.1 -7389 1co4A 42 3.11e+00 1co4A g.47.1.1 45347 1igwA 434 3.20e+00 c.1.12.7 62370 1quqB 121 3.35e+00 1quqB b.40.4.3 25305 1aba 87 3.49e+00 1aba c.47.1.1 32760 1j3vA 289 3.88e+00 a.100.1.1 -1303 c.2.1.6 -5947 1j8fA 323 4.00e+00 1j8fA c.31.1.5 62738 1aq0A 306 4.25e+00 1aq0A c.1.8.3 28842 1b1cA 181 4.34e+00 1amoA c.23.5.2 31212 1cl8A 276 4.88e+00 1ckqA c.52.1.1 33230 1fzqA 181 5.00e+00 1hurA c.37.1.8 32060 1r4aA 165 5.17e+00 c.37.1.8 -7089 1h7eA 245 5.18e+00 c.68.1.13 60717 1iyxA 432 5.40e+00 c.1.11.1 83815 d.54.1.1 83816 1r0rI 51 5.42e+00 unknown_sccs -12572 1r5pA 108 5.43e+00 unknown_sccs -7487 1r9dA 787 5.57e+00 1eg5A 384 5.61e+00 1ecxA c.67.1.3 34429 2tpsA 227 6.21e+00 2tpsA c.1.3.1 28591 1bykA 255 6.45e+00 1bykA c.93.1.1 35706 1eejA 216 6.47e+00 1eejA c.47.1.9 33057 d.17.3.1 38071 1adoA 363 6.84e+00 1fbaA c.1.10.1 29124 1erv 105 7.15e+00 1erv c.47.1.1 32743 1uouA 474 7.33e+00 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 1j08A 226 7.64e+00 c.47.1.2 83855 c.47.1.2 83856 1sxrA 183 8.00e+00 1jndA 420 8.08e+00 c.1.8.5 71757 d.26.3.1 71758 1hufA 140 8.12e+00 1hufA d.195.1.1 61272 1qnaA 200 8.38e+00 1ytbA d.129.1.1 41226 d.129.1.1 41227 1ayl 541 8.47e+00 1ayl c.91.1.1 64718 c.109.1.1 64719 1sviA 195 8.67e+00 1s6yA 450 8.72e+00 1nhs 447 9.25e+00 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1kkoA 413 9.93e+00 c.1.11.2 68675 d.54.1.1 68676 1nhp 447 9.98e+00 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1f2dA 341 1.02e+01 1f2dA c.79.1.1 35298 1sgpI 51 1.04e+01 2ovo unknown_sccs 44678 1gskA 513 1.05e+01 b.6.1.3 83314 b.6.1.3 83315 b.6.1.3 83316 1nmoA 247 1.05e+01 unknown_sccs -8746 1a2vA 655 1.05e+01 1a2vA b.30.2.1 24416 d.17.2.1 38059 d.17.2.1 38060 1mvoA 136 1.05e+01 c.23.1.1 79513 3vub 101 1.05e+01 3vub b.34.6.1 24613 1ja1A 622 1.05e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1rjdA 334 1.07e+01 unknown_sccs -8079 1h75A 81 1.11e+01 1h75A c.47.1.1 60716 1go3E 187 1.19e+01 b.40.4.5 83054 d.230.1.1 83055 1jb9A 316 1.20e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 3lynA 136 1.21e+01 1lis a.19.1.1 16413 1gnwA 211 1.23e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1ni3A 392 1.23e+01 c.37.1.8 80531 d.15.10.2 80532 1nycA 111 1.23e+01 unknown_sccs -4522 1fn9A 365 1.25e+01 1fn9A d.196.1.1 59894 1o0yA 260 1.32e+01 c.1.10.1 80756 1imbA 277 1.35e+01 1imbA e.7.1.1 42957 2hhmA 276 1.36e+01 1imbA e.7.1.1 42955 1g6hA 257 1.38e+01 1gajA c.37.1.12 60318 1ovaA 386 1.38e+01 1ovaA e.1.1.1 42619 1uptA 171 1.41e+01 c.37.1.8 -7085 1a8l 226 1.48e+01 1a8l c.47.1.2 32777 c.47.1.2 32778 1a8y 367 1.49e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1uhgA 385 1.50e+01 e.1.1.1 88491 1scuA 288 1.50e+01 2scuA c.2.1.8 30307 c.23.4.1 31135 1fgyA 127 1.51e+01 1faoA b.55.1.1 26976 1o0wA 252 1.53e+01 a.149.1.1 80751 d.50.1.1 80752 1pb1A 416 1.57e+01 c.77.1.1 88014 1aiu 105 1.57e+01 1erv c.47.1.1 32746 1fv5A 36 1.66e+01 1fv5A g.37.1.2 45075 1s48A 609 1.68e+01 e.8.1.4 -11955 1r2qA 170 1.70e+01 c.37.1.8 -7071 1uxoA 192 1.72e+01 1otvA 259 1.73e+01 unknown_sccs -1915 1vjqA 79 1.74e+01 unknown_sccs -13478 1iso 416 1.79e+01 1iso c.77.1.1 35065 1nrfA 262 1.83e+01 e.3.1.1 -11780 1sb8A 352 1.85e+01 1exbA 332 1.90e+01 1qrqA c.1.7.1 28666 1pvmA 184 1.92e+01 d.37.1.1 -9612 d.37.1.1 -9613 unknown_sccs -12799 1oaa 259 1.92e+01 1oaa c.2.1.2 29829 1qlpA 394 1.93e+01 1ovaA e.1.1.1 42628 1fw1A 216 1.94e+01 a.45.1.1 60051 c.47.1.5 60052 1rkuA 206 1.96e+01 unknown_sccs -6823 1nnlA 225 1.99e+01 c.108.1.4 85906 1uqrA 154 2.05e+01 c.23.13.1 -6455 1gvoA 364 2.10e+01 c.1.4.1 76357 1us5A 314 2.11e+01 c.94.1.1 -8686 1jqeA 292 2.11e+01 c.66.1.19 71789 1toaA 313 2.13e+01 1toaA c.92.2.2 35598 1h61A 364 2.14e+01 1oyc c.1.4.1 60657 1m4jA 142 2.18e+01 d.109.1.2 78602 1k0fA 277 2.18e+01 c.92.2.2 71974 1vhxA 150 2.18e+01 unknown_sccs -7663 1rf6A 427 2.19e+01 d.68.2.2 -10314 1o0pA 104 2.21e+01 d.58.7.1 86535 1ky3A 182 2.23e+01 c.37.1.8 73193 1ec7A 446 2.26e+01 1bqg c.1.11.2 29218 d.54.1.1 38862 1jfuA 186 2.26e+01 c.47.1.10 62940 1vjgA 218 2.29e+01 unknown_sccs -6447 1jvwA 167 2.39e+01 d.26.1.1 71907 1rvkA 382 2.44e+01 c.1.11.2 -5568 d.54.1.1 -9826 1f61A 429 2.48e+01 1dquA c.1.12.7 29319 1n57A 291 2.54e+01 c.23.16.2 85328 1iloA 77 2.64e+01 c.47.1.1 66205 1jztA 246 2.67e+01 c.104.1.1 63319 1vypX 364 2.67e+01 1e6bA 221 2.69e+01 1e6bA a.45.1.1 59294 c.47.1.5 59295 1ajsA 412 2.69e+01 1ajsA c.67.1.1 34276 1vyrA 364 2.69e+01 1whsA 255 2.72e+01 1ivyA c.69.1.5 34649 1bw0A 416 2.73e+01 1bw0A c.67.1.1 34385 1s1hM 132 2.73e+01 1f8mA 429 2.77e+01 1dquA c.1.12.7 29315 1pzxA 289 2.84e+01 c.119.1.1 -8623 1eq2A 310 2.88e+01 1eq2A c.2.1.2 29814 1jtdB 273 2.88e+01 b.69.5.2 67265 1bed 181 2.88e+01 1fvkA unknown_sccs -7444 1mo0A 275 2.89e+01 c.1.1.1 79329 2rn2 155 2.94e+01 2rn2 c.55.3.1 33551 1kssA 571 2.95e+01 a.138.1.3 72928 c.3.1.4 72929 d.168.1.1 72930 1dzfA 215 2.98e+01 1dzfA c.52.3.1 33344 d.78.1.1 39753 1e39A 571 3.03e+01 1qjdA a.138.1.3 19694 c.3.1.4 30431 d.168.1.1 42314 3daaA 277 3.08e+01 1daaA e.17.1.1 43272 1se8A 301 3.09e+01 1a0i 348 3.12e+01 1a0i b.40.4.6 25363 d.142.2.1 41577 1exqA 154 3.21e+01 1b9dA c.55.3.2 33646 1kamA 194 3.23e+01 c.26.1.3 72254 1j6oA 268 3.24e+01 c.1.9.12 77088 1jkgA 140 3.25e+01 d.17.4.2 66795 1a4iA 301 3.38e+01 1a4iA c.2.1.7 30278 c.58.1.2 33926 1ry9A 145 3.49e+01 d.198.1.1 -9020 1qqgA 264 3.50e+01 1qqgA b.55.1.2 26987 b.55.1.2 26988 1jwiB 125 3.53e+01 d.169.1.1 67384 1esmA 316 3.58e+01 1esmA c.37.1.6 31953 1itg 166 3.62e+01 1b9dA c.55.3.2 33661 1k66A 149 3.63e+01 c.23.1.1 -6406 1oihA 301 3.67e+01 b.82.2.5 -4899 1sr9A 644 3.76e+01 1dbhA 354 3.76e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1ip9A 85 3.77e+01 1ip9A d.15.2.2 62638 4enl 436 3.79e+01 4enl c.1.11.1 29202 d.54.1.1 38846 1eudA 311 3.79e+01 2scuA c.2.1.8 30312 c.23.4.1 31140 1hdhA 536 3.83e+01 c.76.1.2 65805 1pbjA 125 3.91e+01 d.37.1.1 -9608 d.37.1.1 -9609 1jo0A 98 3.94e+01 d.68.4.1 77140