# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1grx	85	6.02e-01	1kte	c.47.1.1	32766
1sly	618	1.03e+00	1qsaA	a.118.5.1	19184
				d.2.1.6	36990
1qsaA	618	1.30e+00	1qsaA	a.118.5.1	19182
				d.2.1.6	36988
1ql3A	99	1.53e+00	1ycc	a.3.1.1	15822
1t1vA	93	1.91e+00			
1kte	105	2.50e+00	1kte	c.47.1.1	32771
1j0fA	100	2.67e+00		unknown_sccs	-7483
1fjgJ	105	3.24e+00	1fjfJ	d.58.15.1	39330
1h75A	81	4.39e+00	1h75A	c.47.1.1	60716
1ry9A	145	7.89e+00		d.198.1.1	-9020
1o0pA	104	8.69e+00		d.58.7.1	86535
1m2dA	110	9.48e+00		c.47.1.11	78476
1q4mA	221	1.02e+01		unknown_sccs	-1910
1r5pA	108	1.07e+01		unknown_sccs	-7487
1a8h	500	1.14e+01	1a8h	a.27.1.1	16922
				c.26.1.1	31589
1s1hM	132	1.38e+01			
1ns5A	155	1.42e+01		c.116.1.3	80705
1lv3A	68	1.48e+01		g.39.1.9	78231
1lm6A	215	1.67e+01		d.167.1.1	84628
1j34A	129	1.74e+01		d.169.1.1	84048
1gzgA	337	2.03e+01		c.1.10.3	70805
1jmxA	494	2.09e+01		a.3.1.7	66901
				a.3.1.7	66902
				b.1.18.14	66903
				b.1.18.14	66904
				b.61.4.1	66905
1v65A	64	2.34e+01			
1vjqA	79	2.35e+01		unknown_sccs	-13478
1s7zA	117	2.93e+01		unknown_sccs	-344
1mszA	86	2.95e+01		d.68.7.1	79428
1phk	298	2.96e+01	1cdkA	d.144.1.7	41635
1tiiC	53	3.04e+01	1tiiC		
2ezk	99	3.19e+01	2ezk	a.4.1.2	16027
1s4nA	348	3.21e+01		unknown_sccs	-8262
1f37A	110	3.46e+01	1f37A	c.47.1.11	33088
3daaA	277	3.57e+01	1daaA	e.17.1.1	43272
1a8y	367	3.65e+01	1a8y	c.47.1.3	32781
				c.47.1.3	32782
				c.47.1.3	32783
1vsd	152	3.80e+01	1cxqA	c.55.3.2	33625
1xgsA	295	3.81e+01	1bn5	a.4.5.25	16216
				d.127.1.1	41153
1a8o	70	3.92e+01	1a8o	a.28.3.1	16953