CreatePredAlphaCost pred_alpha2k alpha11 T0250.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0250.t04.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 10 near_backbone 5 way_back 5 dry5 25 dry6.5 40 dry8 25 dry12 2 \ phobic_fit 4 \ sidechain 1 \ bystroff 7 \ soft_clashes 5 backbone_clashes 2 \ break 5 \ pred_alpha2k 1 \ pred_alpha04 7 \ constraints 6 \ hbond_geom 1 \ hbond_geom_backbone 1 \ hbond_geom_beta 5 \ hbond_geom_beta_pair 10 # stupid constraints to try to get the "handle" to pack in closer. constraint L87.CB V123.CB -10 6 8 1 constraint L90.CB V123.CB -10 6 8 1 constraint V95.CB V123.CB -10 6 8 1 constraint F96.CB V123.CB -10 6 8 1 constraint I99.CB V123.CB -10 6 8 1