Best Alignments for T0250

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1e49P/2fua-T0250-fssp-local-adpstyle5.a2m 1e49P/2fua-T0250-fssp-local-adpstyle5.al 1.3324e+013.7277e+00 2fua c.74.1.1
1k8fA/T0250-1k8fA-t2k-global-adpstyle5.a2m 1k8fA/T0250-1k8fA-t2k-global-adpstyle5.al 1.5706e+011.1386e+01 b.80.5.1
1s1dA/T0250-1s1dA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1s1dA/T0250-1s1dA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.3250e+013.8549e+01 unknown_sccs
1azzA/5ptp-T0250-fssp-local-adpstyle5.a2m 1azzA/5ptp-T0250-fssp-local-adpstyle5.al 3.1574e+011.1054e+01 5ptp b.47.1.2
1pboA/1obpA-T0250-fssp-local-adpstyle5.a2m 1pboA/1obpA-T0250-fssp-local-adpstyle5.al 3.2905e+011.1086e+01 1obpA b.60.1.1
1g85A/T0250-1g85A-t2k-global-adpstyle5.a2m 1g85A/T0250-1g85A-t2k-global-adpstyle5.al 3.3051e+011.1250e+01 b.60.1.1
1lnlA/T0250-1lnlA-t2k-local-adpstyle1.a2m 1lnlA/T0250-1lnlA-t2k-local-adpstyle1.al 3.6804e+013.9220e+01 b.112.1.1
a.86.1.1
1osnA/T0250-1osnA-t2k-global-adpstyle1.a2m 1osnA/T0250-1osnA-t2k-global-adpstyle1.al 3.7246e+016.2876e+00 c.37.1.1
1h4rA/T0250-1h4rA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1h4rA/T0250-1h4rA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.8753e+014.0298e+00 b.55.1.5
d.15.1.4
a.11.2.1
1us8A/T0250-1us8A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1us8A/T0250-1us8A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.9011e+012.2101e+00 c.37.1.12

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001