# List of top-scoring protein chains for T0250.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s1dA 331 6.96e-01 unknown_sccs -4566 1hx6A 394 7.67e-01 1cjdA b.121.2.1 58995 b.121.2.1 58996 1fzdA 201 7.75e-01 3fib d.171.1.1 42484 1e49P 215 1.93e+00 2fua c.74.1.1 34981 1hcd 118 2.19e+00 1hce b.42.5.2 25624 1k8fA 157 2.47e+00 b.80.5.1 84344 1cfzA 162 2.80e+00 1cfzA c.56.1.1 33754 1dppA 507 3.09e+00 1dpe c.94.1.1 35800 1dpe 507 3.18e+00 1dpe c.94.1.1 35799 1ky9A 448 3.50e+00 b.36.1.4 73198 b.47.1.1 73199 2aacA 177 6.21e+00 2arcA b.82.4.1 28150 1azzA 226 7.04e+00 5ptp b.47.1.2 26072 1gt1A 159 7.13e+00 b.60.1.1 -4436 1hqvA 191 7.35e+00 1hqvA a.39.1.8 61160 1pboA 159 7.49e+00 1obpA b.60.1.1 27094 1g85A 159 7.54e+00 b.60.1.1 70159 1obpA 159 7.56e+00 1obpA b.60.1.1 27092 1o54A 277 7.61e+00 c.66.1.13 -8095 1lnlA 408 8.86e+00 a.86.1.1 84635 b.112.1.1 84636 1osnA 341 9.02e+00 c.37.1.1 87387 1djqA 729 9.70e+00 2tmdA c.1.4.1 28614 c.3.1.1 30315 c.4.1.1 30600 1o94A 729 9.70e+00 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 2arcA 164 9.84e+00 2arcA b.82.4.1 28148 1t0lA 414 1.01e+01 1dmlA 319 1.08e+01 1dmlA d.131.1.2 41380 d.131.1.2 41381 1imoA 88 1.20e+01 1imoA c.15.1.2 62590 1r2jA 366 1.20e+01 a.29.3.1 -748 e.6.1.1 -11864 1jli 112 1.22e+01 1jli a.26.1.2 16884 2ara 149 1.29e+01 2arcA b.82.4.1 28152 1l1oC 181 1.40e+01 b.40.4.3 73480 1l1jA 239 1.40e+01 b.47.1.1 84516 1a8y 367 1.48e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1qmyA 167 1.51e+01 1qmyA d.3.1.2 37094 1rynA 202 1.52e+01 c.56.3.1 -7860 1meoA 209 1.55e+01 c.65.1.1 79035 1fhjA 141 1.63e+01 a.1.1.2 59837 1oahA 519 1.75e+01 a.138.1.3 86736 1v5tA 90 1.77e+01 1mejA 223 1.78e+01 c.65.1.1 79029 1hbnB 442 1.80e+01 1mroB a.89.1.1 60900 d.58.31.2 60901 1c07A 95 1.85e+01 1eh2 a.39.1.6 17337 1qolA 173 1.98e+01 1qmyA d.3.1.2 37097 1mo0A 275 1.99e+01 c.1.1.1 79329 1vkjA 285 2.01e+01 1gjyA 167 2.04e+01 a.39.1.8 70199 1l6zA 216 2.09e+01 b.1.1.1 77770 b.1.1.4 77771 1jnrB 150 2.16e+01 d.58.1.5 66969 1e6vB 443 2.34e+01 1mroB a.89.1.1 18533 d.58.31.2 39451 1nzkA 143 2.44e+01 b.42.1.1 -3992 1ofhA 310 2.45e+01 c.37.1.20 86948 1r0vA 305 2.50e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1cfr 285 2.56e+01 1cfr c.52.1.7 33312 1dbhA 354 2.86e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1odkA 235 3.02e+01 c.56.2.1 86863 1viuA 203 3.07e+01 d.113.1.1 -10889 2achB 40 3.08e+01 1as4B 1nbuC 119 3.15e+01 d.96.1.3 -10701 2aaa 484 3.26e+01 7taa b.71.1.1 27777 c.1.8.1 28764 1fviA 297 3.49e+01 1fviA b.40.4.6 25364 d.142.2.1 41578 1n4hA 259 3.59e+01 a.123.1.1 -1681 1p8lA 304 3.61e+01 b.40.4.6 -3951 d.142.2.1 -11247 1k4wA 252 3.65e+01 a.123.1.1 72068 1nq7A 244 3.65e+01 a.123.1.1 -1682 1ffkW 73 3.65e+01 1ffkW g.41.8.1 45315 1rcsA 105 3.68e+01 1jhgA a.4.12.1 19025 1pbgA 468 3.68e+01 1e70M c.1.8.4 28946 1d4vB 163 3.70e+01 1d4vB b.22.1.1 23884 2wrpR 107 3.73e+01 1jhgA a.4.12.1 19010 3wrp 108 3.75e+01 1jhgA a.4.12.1 19015 1troA 108 3.75e+01 1jhgA a.4.12.1 19011 1fiqA 219 3.75e+01 1qj2A a.56.1.1 17912 d.15.4.2 37697 1trrA 107 3.77e+01 1jhgA a.4.12.1 19017 1du3D 168 3.77e+01 1d4vB b.22.1.1 23888 1jhgA 101 3.81e+01 1jhgA a.4.12.1 19009 1iruI 234 3.85e+01 d.153.1.4 71360 2pbg 468 3.85e+01 1e70M c.1.8.4 28948 2tsrA 307 3.90e+01 1bkpA d.117.1.1 41043 1i50K 120 3.91e+01 d.74.3.2 61765