# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s1dA 331 9.33e-01 unknown_sccs -4566 1o12A 376 1.66e+00 b.92.1.5 80758 c.1.9.10 80759 1yna 194 2.56e+00 1axkA b.29.1.11 24335 2aacA 177 3.20e+00 2arcA b.82.4.1 28150 1upiA 225 3.54e+00 b.82.1.1 -4823 1kk6A 209 4.01e+00 b.81.1.3 68657 1mr7A 209 4.04e+00 b.81.1.3 -4798 2arcA 164 5.53e+00 2arcA b.82.4.1 28148 2arcB 164 5.66e+00 2arcA b.82.4.1 28149 1d4vB 163 7.38e+00 1d4vB b.22.1.1 23884 1pvxA 194 7.89e+00 1axkA b.29.1.11 24341 1n9eA 787 7.97e+00 b.30.2.1 -3529 d.17.2.1 -9278 d.17.2.1 -9279 1f8rA 498 8.02e+00 1f8rA c.3.1.2 30410 d.16.1.5 37974 1d2gA 292 8.90e+00 1xvaA c.66.1.5 34187 1iqaA 160 9.19e+00 b.22.1.1 71274 1ohtA 215 1.19e+01 d.118.1.1 87036 1xypA 190 1.19e+01 1axkA b.29.1.11 24327 1enxA 190 1.21e+01 1axkA b.29.1.11 24325 1lci 550 1.24e+01 1lci e.23.1.1 43349 1ugmA 125 1.39e+01 1l9vA 317 1.43e+01 d.13.2.1 73760 d.216.1.1 73761 1bk1 184 1.47e+01 1axkA b.29.1.11 24340 1viuA 203 1.53e+01 d.113.1.1 -10889 1xvaA 292 1.56e+01 1xvaA c.66.1.5 34183 1derA 547 1.56e+01 1derA 1dg6A 191 1.59e+01 1d4vB b.22.1.1 23883 1qmyA 167 1.60e+01 1qmyA d.3.1.2 37094 1amuA 563 1.63e+01 1amuA e.23.1.1 43351 1m1hA 248 1.66e+01 b.114.1.1 78415 d.58.42.1 78416 1i50K 120 1.75e+01 d.74.3.2 61765 1b4aA 149 1.76e+01 1b4aA a.4.5.3 16088 d.74.2.1 39721 1om0A 274 1.79e+01 c.1.8.5 87058 1d2qA 173 1.79e+01 1d4vB b.22.1.1 23894 1bhjA 292 1.86e+01 1xvaA c.66.1.5 34189 1hh2P 344 1.96e+01 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1pysB 785 2.08e+01 1pysB a.6.1.1 16299 a.6.1.1 16300 b.40.4.4 25311 d.58.13.1 39310 d.104.1.1 40779 d.138.1.1 41455 1meoA 209 2.43e+01 c.65.1.1 79035 1d2iA 223 2.50e+01 1d2iA c.52.1.5 33297 1dfmA 223 2.53e+01 1d2iA c.52.1.5 33295 1l1jA 239 2.64e+01 b.47.1.1 84516 1fvrA 327 2.78e+01 d.144.1.7 60047 1reoA 486 2.79e+01 c.3.1.2 -5997 d.16.1.5 -9217 1d8hA 311 2.80e+01 1d8iA d.63.1.1 39544 1lufA 343 2.92e+01 d.144.1.7 78223 1cklB 126 2.93e+01 1cklB g.18.1.1 44853 g.18.1.1 44854 1rwhA 757 2.93e+01 a.102.3.2 -1340 b.24.1.1 -3300 b.30.5.2 -3508 2gar 212 2.94e+01 2gar c.65.1.1 34161 1kzkA 99 3.07e+01 b.50.1.1 73371 1k6dA 220 3.17e+01 unknown_sccs 72082 1ej6B 1275 3.36e+01 i.7.1.1 45968 1ykfA 352 3.37e+01 1pedA b.35.1.2 24757 c.2.1.1 29773 1m3jA 471 3.39e+01 f.9.1.1 -12372 1jl0A 334 3.44e+01 1jenA d.156.1.1 63155 1pcl 355 3.44e+01 1pcl b.80.1.1 28021 1luzA 88 3.47e+01 b.40.4.5 74271 1f2hA 169 3.56e+01 1f3vA d.58.22.1 59612 1ijtA 128 3.62e+01 1bfg b.42.1.1 62510 1ghj 79 3.64e+01 1ghj b.84.1.1 28232 1difA 99 3.64e+01 1fmb b.50.1.1 26503 1ezvE 185 3.68e+01 1rie b.33.1.1 59548 f.23.12.1 59549 2wrpR 107 3.68e+01 1jhgA a.4.12.1 19010 1jhgA 101 3.74e+01 1jhgA a.4.12.1 19009 1s5pA 235 3.92e+01 c.31.1.5 -6774 1trrA 107 3.95e+01 1jhgA a.4.12.1 19017 1nh0A 99 3.98e+01 b.50.1.1 -4299