# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s1dA 331 4.26e-01 unknown_sccs -4566 1yna 194 1.66e+00 1axkA b.29.1.11 24335 1pvxA 194 2.24e+00 1axkA b.29.1.11 24341 1xypA 190 4.17e+00 1axkA b.29.1.11 24327 1d2iA 223 4.28e+00 1d2iA c.52.1.5 33297 1enxA 190 4.42e+00 1axkA b.29.1.11 24325 1n9eA 787 4.43e+00 b.30.2.1 -3529 d.17.2.1 -9278 d.17.2.1 -9279 1dfmA 223 4.87e+00 1d2iA c.52.1.5 33295 1lci 550 7.33e+00 1lci e.23.1.1 43349 1amuA 563 7.41e+00 1amuA e.23.1.1 43351 1bk1 184 7.59e+00 1axkA b.29.1.11 24340 1iqaA 160 7.60e+00 b.22.1.1 71274 1upiA 225 8.43e+00 b.82.1.1 -4823 1o12A 376 8.61e+00 b.92.1.5 80758 c.1.9.10 80759 1cklB 126 8.99e+00 1cklB g.18.1.1 44853 g.18.1.1 44854 1pcl 355 9.17e+00 1pcl b.80.1.1 28021 1m6uA 272 9.58e+00 b.2.5.7 78706 1r8oA 96 9.84e+00 1jl0A 334 9.89e+00 1jenA d.156.1.1 63155 2gar 212 9.94e+00 2gar c.65.1.1 34161 1gefA 123 1.26e+01 1gefA c.52.1.18 60465 1hh2P 344 1.39e+01 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1dy9A 187 1.40e+01 1jxpA b.47.1.3 26400 1ii7A 333 1.59e+01 1ii7A d.159.1.4 62415 2aacA 177 1.66e+01 2arcA b.82.4.1 28150 2arcA 164 1.69e+01 2arcA b.82.4.1 28148 2arcB 164 1.69e+01 2arcA b.82.4.1 28149 1qmyA 167 1.84e+01 1qmyA d.3.1.2 37094 1cklA 126 1.90e+01 1cklB g.18.1.1 44851 g.18.1.1 44852 1ipiA 123 1.91e+01 c.52.1.18 66255 1xvaA 292 1.99e+01 1xvaA c.66.1.5 34183 1ugmA 125 2.01e+01 1d2qA 173 2.02e+01 1d4vB b.22.1.1 23894 1m1hA 248 2.12e+01 b.114.1.1 78415 d.58.42.1 78416 1b6rA 355 2.13e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1pmy 123 2.20e+01 1bqk b.6.1.1 22888 1k5cA 335 2.22e+01 b.80.1.3 72076 1bmlC 362 2.31e+01 1bmlC d.15.5.1 37729 d.15.5.1 37730 d.15.5.1 37731 1f8rA 498 2.36e+01 1f8rA c.3.1.2 30410 d.16.1.5 37974 1jenA 267 2.36e+01 1jenA 1mngA 203 2.38e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1ohtA 215 2.45e+01 d.118.1.1 87036 1d8cA 723 2.45e+01 1d8cA c.1.13.1 29325 1viuA 203 2.46e+01 d.113.1.1 -10889 1jkxA 212 2.48e+01 c.65.1.1 66813 1kk6A 209 2.55e+01 b.81.1.3 68657 1mr7A 209 2.58e+01 b.81.1.3 -4798 1b6sA 355 2.63e+01 1b6rA b.84.2.1 28242 c.30.1.1 31649 d.142.1.2 41494 1jubA 311 2.66e+01 c.1.4.1 -5188 1b4aA 149 2.70e+01 1b4aA a.4.5.3 16088 d.74.2.1 39721 1meoA 209 2.81e+01 c.65.1.1 79035 1ghj 79 2.82e+01 1ghj b.84.1.1 28232 1ud9A 245 2.84e+01 1sefA 274 2.88e+01 1kzkA 99 2.88e+01 b.50.1.1 73371 1bncA 449 2.94e+01 1bncA b.84.2.1 28236 c.30.1.1 31643 d.142.1.2 41488 1garA 212 2.98e+01 2gar c.65.1.1 34162 2dorA 311 3.02e+01 2dorA c.1.4.1 28593 1kevA 351 3.04e+01 1pedA b.35.1.2 24749 c.2.1.1 29765 1i50K 120 3.07e+01 d.74.3.2 61765 1dorA 311 3.17e+01 2dorA c.1.4.1 28595 1h4gA 207 3.21e+01 b.29.1.11 70863 1c76A 136 3.21e+01 2sak d.15.5.1 37718 1k6dA 220 3.24e+01 unknown_sccs 72082 1ijtA 128 3.30e+01 1bfg b.42.1.1 62510 1cr5A 189 3.31e+01 1cr5A b.52.2.3 26931 d.31.1.1 38465 1ne6A 283 3.38e+01 b.82.3.2 -4918 b.82.3.2 -4919 1ip9A 85 3.52e+01 1ip9A d.15.2.2 62638 1uxxX 133 3.57e+01 b.18.1.10 -3107 1l1nA 183 3.58e+01 b.47.1.4 73476 1d5tA 433 3.66e+01 1gnd c.3.1.3 30422 d.16.1.6 37986 1dcuA 357 3.72e+01 1frpA e.7.1.1 42943 1ko3A 230 3.77e+01 d.157.1.1 -11454 1uhvA 500 3.82e+01 b.71.1.2 -4683 c.1.8.3 -5354 1d4vB 163 3.84e+01 1d4vB b.22.1.1 23884 8prkA 287 3.86e+01 1wgjA b.40.5.1 25395 1s14A 194 3.91e+01 d.122.1.2 -10973 1fc4A 401 4.00e+01 1bs0A c.67.1.4 59760