# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s6tA 285 1.16e+00 c.37.1.5 -7040 1vkjA 285 1.16e+00 1hb5A 394 1.87e+00 i.6.1.1 65752 1hx6A 394 1.87e+00 1cjdA b.121.2.1 58995 b.121.2.1 58996 1cjdA 394 2.03e+00 1cjdA b.121.2.1 58963 b.121.2.1 58964 1kq5A 159 2.43e+00 b.80.5.1 68795 1k4zA 159 2.56e+00 b.80.5.1 72070 1kfuS 184 4.62e+00 a.39.1.8 68574 1qtnA 164 8.27e+00 1pauA c.17.1.1 30999 1hce 118 8.37e+00 1hce b.42.5.2 25625 1o66A 275 8.52e+00 c.1.12.8 -5590 1m3uA 264 9.21e+00 c.1.12.8 84784 1umnA 165 1.04e+01 a.25.1.1 -656 1f8rA 498 1.29e+01 1f8rA c.3.1.2 30410 d.16.1.5 37974 1ixxA 129 1.36e+01 1ixxB d.169.1.1 42335 1auoA 218 1.47e+01 1auoA c.69.1.14 34716 1hme 77 1.49e+01 1cktA a.21.1.1 16418 1f52A 468 1.56e+01 1lgr d.15.9.1 37839 d.128.1.1 41169 1fnnA 389 1.76e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1oeyA 83 1.85e+01 d.15.2.2 -9162 1aurA 218 1.86e+01 1auoA c.69.1.14 34718 1ii7A 333 1.87e+01 1ii7A d.159.1.4 62415 1as4B 37 1.92e+01 1as4B 1hcd 118 1.95e+01 1hce b.42.5.2 25624 1lrzA 426 1.99e+01 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 2glsA 470 2.05e+01 1lgr d.15.9.1 37851 d.128.1.1 41181 2lgsA 468 2.13e+01 1lgr d.15.9.1 37838 d.128.1.1 41168 1lki 180 2.16e+01 1lki a.26.1.1 16829 1lgr 468 2.27e+01 1lgr d.15.9.1 37837 d.128.1.1 41167 1ck7A 631 2.57e+01 1ck7A a.20.1.2 58969 b.66.1.1 27538 d.92.1.11 58970 g.14.1.2 44674 g.14.1.2 44675 g.14.1.2 44676 1b24A 188 2.79e+01 1b24A d.95.2.1 40573 d.95.2.1 40574 1hsm 79 2.98e+01 1cktA a.21.1.1 16421 1pv9A 348 2.98e+01 c.55.2.1 -7610 d.127.1.1 -11000 1l1nA 183 3.02e+01 b.47.1.4 73476 1cof 143 3.11e+01 1cof d.109.1.2 40860 1ev7A 317 3.13e+01 1ev7B c.52.1.9 33315 1nal1 297 3.14e+01 1nal3 1h4rA 314 3.33e+01 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1bbhA 131 3.41e+01 1bbhA a.24.3.2 16546 3pgk 416 3.42e+01 16pk c.86.1.1 35451 1iawA 317 3.49e+01 c.52.1.9 62126 1ev7B 317 3.57e+01 1ev7B c.52.1.9 33316 1ky9A 448 3.62e+01 b.36.1.4 73198 b.47.1.1 73199 1mngA 203 3.62e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1qm4A 396 3.65e+01 1mxb d.130.1.1 41350 d.130.1.1 41351 d.130.1.1 41352 1gy7A 125 3.66e+01 d.17.4.2 70738 1bowA 159 3.68e+01 1bowA d.60.1.1 39528 1mplA 349 3.69e+01 e.3.1.1 79387 1pwgA 349 3.76e+01 1jigA 146 3.93e+01 a.25.1.1 71685