# List of top-scoring protein chains for T0250.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s1dA 331 5.46e-01 unknown_sccs -4566 1fzdA 201 5.69e-01 3fib d.171.1.1 42484 1hx6A 394 9.97e-01 1cjdA b.121.2.1 58995 b.121.2.1 58996 1e49P 215 1.79e+00 2fua c.74.1.1 34981 1hcd 118 2.84e+00 1hce b.42.5.2 25624 1cfzA 162 3.04e+00 1cfzA c.56.1.1 33754 1ky9A 448 5.02e+00 b.36.1.4 73198 b.47.1.1 73199 1k8fA 157 6.43e+00 b.80.5.1 84344 2aacA 177 6.85e+00 2arcA b.82.4.1 28150 1azzA 226 7.37e+00 5ptp b.47.1.2 26072 1gt1A 159 7.54e+00 b.60.1.1 -4436 1nzkA 143 7.66e+00 b.42.1.1 -3992 1g85A 159 7.71e+00 b.60.1.1 70159 1obpA 159 7.77e+00 1obpA b.60.1.1 27092 1pboA 159 7.79e+00 1obpA b.60.1.1 27094 1jli 112 8.86e+00 1jli a.26.1.2 16884 1o54A 277 1.03e+01 c.66.1.13 -8095 2arcA 164 1.08e+01 2arcA b.82.4.1 28148 1mo0A 275 1.16e+01 c.1.1.1 79329 1osnA 341 1.23e+01 c.37.1.1 87387 1djqA 729 1.24e+01 2tmdA c.1.4.1 28614 c.3.1.1 30315 c.4.1.1 30600 1o94A 729 1.24e+01 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 1rynA 202 1.27e+01 c.56.3.1 -7860 1dppA 507 1.30e+01 1dpe c.94.1.1 35800 1r2jA 366 1.34e+01 a.29.3.1 -748 e.6.1.1 -11864 1dpe 507 1.34e+01 1dpe c.94.1.1 35799 1hqvA 191 1.37e+01 1hqvA a.39.1.8 61160 2ara 149 1.43e+01 2arcA b.82.4.1 28152 1g0uF 248 1.44e+01 d.153.1.4 41951 1imoA 88 1.53e+01 1imoA c.15.1.2 62590 1p63A 144 1.58e+01 b.42.1.1 -4002 1dmlA 319 1.61e+01 1dmlA d.131.1.2 41380 d.131.1.2 41381 1iruI 234 1.63e+01 d.153.1.4 71360 1fntG 287 1.65e+01 2tsrA 307 1.79e+01 1bkpA d.117.1.1 41043 1hbnB 442 1.82e+01 1mroB a.89.1.1 60900 d.58.31.2 60901 1m16A 146 1.86e+01 b.42.1.1 -3987 1t0lA 414 1.87e+01 1fhjA 141 1.95e+01 a.1.1.2 59837 1viuA 203 1.97e+01 d.113.1.1 -10889 1meoA 209 2.01e+01 c.65.1.1 79035 1lnlA 408 2.12e+01 a.86.1.1 84635 b.112.1.1 84636 1l1jA 239 2.13e+01 b.47.1.1 84516 1gjyA 167 2.14e+01 a.39.1.8 70199 1l6zA 216 2.17e+01 b.1.1.1 77770 b.1.1.4 77771 1r0vA 305 2.18e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1v5tA 90 2.19e+01 1l1oC 181 2.27e+01 b.40.4.3 73480 1mejA 223 2.35e+01 c.65.1.1 79029 1cfr 285 2.44e+01 1cfr c.52.1.7 33312 1jy0A 146 2.49e+01 b.42.1.1 -3989 1d4vB 163 2.50e+01 1d4vB b.22.1.1 23884 1vkjA 285 2.52e+01 1du3D 168 2.55e+01 1d4vB b.22.1.1 23888 1bssA 244 2.67e+01 1rvaA c.52.1.2 33256 1dzdA 127 2.71e+01 1bfg b.42.1.1 25532 1e6vB 443 2.81e+01 1mroB a.89.1.1 18533 d.58.31.2 39451 1dzcA 131 2.84e+01 1bfg b.42.1.1 25531 1fiqA 219 2.88e+01 1qj2A a.56.1.1 17912 d.15.4.2 37697 1ofhA 310 2.92e+01 c.37.1.20 86948 1jt7A 146 3.08e+01 b.42.1.1 67255 1jt5A 146 3.08e+01 b.42.1.1 67245 1k5uA 146 3.10e+01 b.42.1.1 68207 1evtA 134 3.11e+01 1bfg b.42.1.1 25527 1jt3A 146 3.11e+01 b.42.1.1 67241 1c07A 95 3.13e+01 1eh2 a.39.1.6 17337 1odkA 235 3.16e+01 c.56.2.1 86863 1djsB 135 3.20e+01 1bfg b.42.1.1 25518 1to6A 371 3.28e+01 1qqlA 140 3.35e+01 1bfg b.42.1.1 25534 1v5pA 126 3.35e+01 1h6tA 291 3.36e+01 b.1.18.15 65686 c.10.2.1 65687 1hknA 139 3.36e+01 b.42.1.1 -3996 1l1nA 183 3.41e+01 b.47.1.4 73476 2afgA 140 3.44e+01 1bfg b.42.1.1 25514 1jbwA 428 3.46e+01 c.59.1.2 62860 c.72.2.2 62861 2achB 40 3.65e+01 1as4B 1qmyA 167 3.66e+01 1qmyA d.3.1.2 37094 1n4hA 259 3.66e+01 a.123.1.1 -1681 1nq7A 244 3.74e+01 a.123.1.1 -1682 1nbuC 119 3.75e+01 d.96.1.3 -10701 1k4wA 252 3.75e+01 a.123.1.1 72068 1bc8C 93 3.88e+01 1awcA a.4.5.21 16168 1ukmB 128 3.93e+01 d.169.1.1 -11625