# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1us8A 147 2.81e-01 c.37.1.12 -7194 1s14A 194 1.03e+00 d.122.1.2 -10973 1f2tA 149 1.12e+00 1f2tA c.37.1.12 32373 1h4rA 314 1.72e+00 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1cr5A 189 2.23e+00 1cr5A b.52.2.3 26931 d.31.1.1 38465 1jj2B 337 2.37e+00 1ffkB b.43.3.2 63086 1s72B 338 2.49e+00 1vybA 238 2.94e+00 1iz5A 249 3.18e+00 d.131.1.2 83834 d.131.1.2 83835 1huxA 270 3.70e+00 1huxA c.55.1.5 61278 1h2cA 140 4.08e+00 b.31.1.1 83462 1ud9A 245 4.17e+00 1nf3C 128 4.47e+00 b.36.1.1 85596 1pyaB 228 4.52e+00 1pyaB 1m4jA 142 5.41e+00 d.109.1.2 78602 1plq 258 6.39e+00 1plq d.131.1.2 41388 d.131.1.2 41389 1ip9A 85 6.87e+00 1ip9A d.15.2.2 62638 1amuA 563 6.92e+00 1amuA e.23.1.1 43351 1vk9A 151 7.44e+00 1p0hA 318 7.58e+00 d.108.1.1 -10802 1khiA 176 7.84e+00 b.34.5.2 77408 b.40.4.5 77409 1ue1A 164 8.96e+00 b.40.4.3 -3905 1ex2A 189 9.90e+00 1ex2A c.51.4.2 33225 2sak 121 1.00e+01 2sak d.15.5.1 37711 1hxn 219 1.02e+01 1hxn b.66.1.1 27529 1ii7A 333 1.06e+01 1ii7A d.159.1.4 62415 1cy9A 264 1.07e+01 1ecl e.10.1.1 43236 2gar 212 1.11e+01 2gar c.65.1.1 34161 1hqz1 141 1.15e+01 1jx4A 352 1.19e+01 unknown_sccs -10188 unknown_sccs -11898 1meoA 209 1.20e+01 c.65.1.1 79035 1e2tA 284 1.21e+01 1e2tA d.3.1.5 37121 1gsa 316 1.25e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1nstA 325 1.26e+01 1nstA c.37.1.5 31951 1lci 550 1.27e+01 1lci e.23.1.1 43349 1ugmA 125 1.31e+01 1b77A 228 1.36e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1oejA 193 1.40e+01 unknown_sccs -4461 1dykA 394 1.44e+01 1dykA b.29.1.4 24223 b.29.1.4 24224 1lshA 1056 1.45e+01 a.118.4.1 74242 f.7.1.1 74243 f.7.1.1 74244 1pfo 500 1.52e+01 1pfo f.9.1.1 43826 1rg9A 383 1.53e+01 d.130.1.1 -11057 d.130.1.1 -11058 d.130.1.1 -11059 1mngA 203 1.60e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1ib8A 164 1.61e+01 b.38.2.1 71168 d.52.4.1 71169 1nijA 318 1.72e+01 c.37.1.10 85741 d.237.1.1 85742 1ef1A 294 1.76e+01 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 1m5q1 130 1.77e+01 1jkxA 212 1.81e+01 c.65.1.1 66813 1ae9A 179 1.84e+01 1ae9A d.163.1.1 42153 1t0yA 122 1.86e+01 d.15.1.1 -9151 1j1tA 233 1.86e+01 unknown_sccs -3462 1mai 131 1.90e+01 1mai b.55.1.1 26951 1hp1A 516 2.03e+01 d.114.1.1 70976 d.159.1.2 70977 1unnC 115 2.09e+01 unknown_sccs -10216 1giqA 413 2.11e+01 d.166.1.1 76224 d.166.1.1 76225 1quqB 121 2.12e+01 1quqB b.40.4.3 25305 1a8y 367 2.19e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1qhlA 227 2.19e+01 1qhlA c.37.1.12 32382 1qy5A 269 2.21e+01 d.122.1.1 -10958 1htqA 477 2.23e+01 d.15.9.1 71035 d.128.1.1 71036 1h9oA 112 2.25e+01 1qadA d.93.1.1 60837 1dgwA 178 2.28e+01 1dgwA b.82.1.2 28090 1j3mA 129 2.30e+01 1dkqA 410 2.42e+01 1dklA c.60.1.2 33998 1h9mA 145 2.49e+01 1h9jA b.40.6.2 60833 b.40.6.2 60834 1oeyJ 107 2.52e+01 d.15.2.2 -9168 1j5uA 136 2.52e+01 d.208.1.1 71584 1ijtA 128 2.69e+01 1bfg b.42.1.1 62510 1nr0A 611 2.70e+01 b.69.4.1 86078 b.69.4.1 86079 1rypH 205 2.85e+01 d.153.1.4 41876 1e58A 249 2.88e+01 1qhfA c.60.1.1 59262 1garA 212 3.01e+01 2gar c.65.1.1 34162 2bpa2 175 3.01e+01 2bpa2 1f0cA 305 3.06e+01 1c8oA e.1.1.1 42676 1gpmA 525 3.15e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1ca1 370 3.21e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1m3iA 471 3.25e+01 f.9.1.1 -12374 1d5tA 433 3.31e+01 1gnd c.3.1.3 30422 d.16.1.6 37986 1pg6A 243 3.37e+01 unknown_sccs -4997 1quqA 129 3.40e+01 1quqA b.40.4.3 25303 1cczA 171 3.42e+01 1cczA b.1.1.1 19758 b.1.1.3 21683 1r4wA 226 3.49e+01 unknown_sccs -7447 1fjgQ 105 3.50e+01 1fjfQ b.40.4.5 25352 1jhfA 202 3.51e+01 a.4.5.2 63057 b.87.1.1 63058 1jb7B 260 3.52e+01 1otcB b.40.4.3 62839 1nrwA 288 3.54e+01 c.108.1.10 86128 1ctn 540 3.60e+01 1ctn b.1.18.2 21876 c.1.8.5 29005 d.26.3.1 38439 1ucsA 64 3.66e+01 b.85.1.1 88466 1ppfE 218 3.68e+01 1a7s b.47.1.2 26234 1jksA 294 3.68e+01 d.144.1.7 71710 1mw9X 592 3.76e+01 e.10.1.1 -11986 1r6xA 395 3.85e+01 b.122.1.3 -5125 c.26.1.5 -6620 1f7zA 233 3.87e+01 5ptp b.47.1.2 59681 1xvaA 292 3.89e+01 1xvaA c.66.1.5 34183 1hw7A 255 3.94e+01 1i7fA d.193.1.1 61297