# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1s1dA	331	1.09e+00		unknown_sccs	-4566
1lci	550	2.56e+00	1lci	e.23.1.1	43349
1ohtA	215	2.62e+00		d.118.1.1	87036
1yna	194	4.20e+00	1axkA	b.29.1.11	24335
1amuA	563	5.39e+00	1amuA	e.23.1.1	43351
1dfmA	223	6.92e+00	1d2iA	c.52.1.5	33295
1ii7A	333	1.06e+01	1ii7A	d.159.1.4	62415
1pvxA	194	1.62e+01	1axkA	b.29.1.11	24341
2arcA	164	1.66e+01	2arcA	b.82.4.1	28148
1b6rA	355	1.70e+01	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1xypA	190	1.77e+01	1axkA	b.29.1.11	24327
1d5tA	433	1.79e+01	1gnd	c.3.1.3	30422
				d.16.1.6	37986
1aly	146	2.09e+01	1aly	b.22.1.1	23856
1k6dA	220	2.19e+01		unknown_sccs	72082
1qmyA	167	2.28e+01	1qmyA	d.3.1.2	37094
1kuuA	202	2.29e+01		d.153.2.1	73019
1uiuA	502	2.36e+01		c.94.1.1	-8674
1s14A	194	2.38e+01		d.122.1.2	-10973
1htqA	477	2.39e+01		d.15.9.1	71035
				d.128.1.1	71036
1dpe	507	2.52e+01	1dpe	c.94.1.1	35799
1mxmA	254	2.63e+01		b.38.1.3	79647
				d.58.43.1	79648
				f.34.1.1	79649
1hh2P	344	2.68e+01		b.40.4.5	65835
				d.52.3.1	65836
				d.52.3.1	65837
				d.202.1.1	65838
1i50K	120	2.70e+01		d.74.3.2	61765
1f8rA	498	2.73e+01	1f8rA	c.3.1.2	30410
				d.16.1.5	37974
1ugmA	125	2.81e+01			
1jj2S	119	2.85e+01	1ffkQ	b.34.5.1	63104
1uayA	242	2.85e+01		c.2.1.2	88390
1s72T	120	2.85e+01			
2gar	212	3.00e+01	2gar	c.65.1.1	34161
1e6wA	260	3.29e+01	1e6wA	c.2.1.2	59326
1us8A	147	3.37e+01		c.37.1.12	-7194
1pmy	123	3.42e+01	1bqk	b.6.1.1	22888
2dorA	311	3.51e+01	2dorA	c.1.4.1	28593
1p42A	270	3.53e+01		d.14.1.7	87754
				d.14.1.7	87755
1v2bA	177	3.58e+01			
1iqaA	160	3.64e+01		b.22.1.1	71274
1rypB	250	3.65e+01	1rypB	d.153.1.4	41933
1bk1	184	3.70e+01	1axkA	b.29.1.11	24340
1fnnA	389	3.77e+01	1fnnA	a.4.5.11	16129
				c.37.1.20	32426
1garA	212	3.78e+01	2gar	c.65.1.1	34162
1jl0A	334	3.80e+01	1jenA	d.156.1.1	63155
1h4gA	207	3.87e+01		b.29.1.11	70863
1jubA	311	3.87e+01		c.1.4.1	-5188
1l9vA	317	3.88e+01		d.13.2.1	73760
				d.216.1.1	73761