# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1s1dA	331	9.46e-01		unknown_sccs	-4566
1mr7A	209	3.47e+00		b.81.1.3	-4798
1ohtA	215	5.21e+00		d.118.1.1	87036
1yna	194	6.62e+00	1axkA	b.29.1.11	24335
1viuA	203	6.70e+00		d.113.1.1	-10889
1lci	550	7.82e+00	1lci	e.23.1.1	43349
1f8rA	498	7.89e+00	1f8rA	c.3.1.2	30410
				d.16.1.5	37974
1om0A	274	7.99e+00		c.1.8.5	87058
2arcA	164	8.21e+00	2arcA	b.82.4.1	28148
1ej6B	1275	1.07e+01		i.7.1.1	45968
1i50K	120	1.21e+01		d.74.3.2	61765
1l9vA	317	1.38e+01		d.13.2.1	73760
				d.216.1.1	73761
1iqaA	160	1.47e+01		b.22.1.1	71274
1amuA	563	1.69e+01	1amuA	e.23.1.1	43351
1qmyA	167	1.82e+01	1qmyA	d.3.1.2	37094
1dg6A	191	2.17e+01	1d4vB	b.22.1.1	23883
1n9eA	787	2.20e+01		b.30.2.1	-3529
				d.17.2.1	-9278
				d.17.2.1	-9279
1d8hA	311	2.24e+01	1d8iA	d.63.1.1	39544
1k6dA	220	2.35e+01		unknown_sccs	72082
1upiA	225	2.39e+01		b.82.1.1	-4823
1b6rA	355	2.46e+01	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1v3vA	333	2.48e+01			
1kzkA	99	2.52e+01		b.50.1.1	73371
1pfo	500	2.54e+01	1pfo	f.9.1.1	43826
1hh2P	344	2.55e+01		b.40.4.5	65835
				d.52.3.1	65836
				d.52.3.1	65837
				d.202.1.1	65838
1xvaA	292	2.64e+01	1xvaA	c.66.1.5	34183
1jztA	246	2.72e+01		c.104.1.1	63319
1reoA	486	2.76e+01		c.3.1.2	-5997
				d.16.1.5	-9217
1dfmA	223	2.77e+01	1d2iA	c.52.1.5	33295
1s5pA	235	2.84e+01		c.31.1.5	-6774
1jl0A	334	3.02e+01	1jenA	d.156.1.1	63155
1difA	99	3.03e+01	1fmb	b.50.1.1	26503
1ugmA	125	3.12e+01			
1ghj	79	3.17e+01	1ghj	b.84.1.1	28232
1ii7A	333	3.19e+01	1ii7A	d.159.1.4	62415
1b7yB	785	3.22e+01	1pysB	a.6.1.1	16301
				a.6.1.1	16302
				b.40.4.4	25312
				d.58.13.1	39311
				d.104.1.1	40780
				d.138.1.1	41456
1d5tA	433	3.26e+01	1gnd	c.3.1.3	30422
				d.16.1.6	37986
1pvxA	194	3.45e+01	1axkA	b.29.1.11	24341
1r0vA	305	3.69e+01		c.52.2.1	-7572
				c.52.2.1	-7573
				d.75.1.1	-10344
1nh0A	99	3.73e+01		b.50.1.1	-4299
1m3iA	471	3.78e+01		f.9.1.1	-12374
1k2fA	190	3.90e+01		b.8.1.2	68054