# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s1dA 331 3.68e-01 unknown_sccs -4566 1lci 550 1.97e+00 1lci e.23.1.1 43349 1amuA 563 3.13e+00 1amuA e.23.1.1 43351 1viuA 203 3.45e+00 d.113.1.1 -10889 1dfmA 223 7.51e+00 1d2iA c.52.1.5 33295 1jl0A 334 7.82e+00 1jenA d.156.1.1 63155 1i50K 120 8.51e+00 d.74.3.2 61765 1s14A 194 9.74e+00 d.122.1.2 -10973 1b6rA 355 9.93e+00 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 2arcA 164 1.07e+01 2arcA b.82.4.1 28148 1ohtA 215 1.18e+01 d.118.1.1 87036 1fnnA 389 1.22e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1yna 194 1.29e+01 1axkA b.29.1.11 24335 1dy9A 187 1.44e+01 1jxpA b.47.1.3 26400 1jubA 311 1.51e+01 c.1.4.1 -5188 1ii7A 333 1.52e+01 1ii7A d.159.1.4 62415 1kzkA 99 1.64e+01 b.50.1.1 73371 1pmy 123 1.65e+01 1bqk b.6.1.1 22888 1ka9H 200 1.66e+01 c.23.16.1 77308 1vom 762 1.71e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 2gar 212 1.73e+01 2gar c.65.1.1 34161 1k6dA 220 1.75e+01 unknown_sccs 72082 1hh2P 344 1.79e+01 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1dorA 311 1.81e+01 2dorA c.1.4.1 28595 1jenA 267 1.89e+01 1jenA 1om0A 274 1.99e+01 c.1.8.5 87058 1ne6A 283 2.00e+01 b.82.3.2 -4918 b.82.3.2 -4919 1lvk 762 2.04e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 2dorA 311 2.04e+01 2dorA c.1.4.1 28593 1gxuA 91 2.05e+01 d.58.10.1 76378 1jztA 246 2.10e+01 c.104.1.1 63319 1dpe 507 2.38e+01 1dpe c.94.1.1 35799 1i58A 189 2.38e+01 1b3qA d.122.1.3 61773 1difA 99 2.38e+01 1fmb b.50.1.1 26503 1nh0A 99 2.45e+01 b.50.1.1 -4299 1pfo 500 2.48e+01 1pfo f.9.1.1 43826 1kb0A 677 2.59e+01 a.3.1.6 68378 b.70.1.1 68379 1l9vA 317 2.60e+01 d.13.2.1 73760 d.216.1.1 73761 1qmyA 167 2.61e+01 1qmyA d.3.1.2 37094 1d0yA 761 2.70e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1mngA 203 2.76e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1r8oA 96 2.77e+01 1b7yB 785 2.79e+01 1pysB a.6.1.1 16301 a.6.1.1 16302 b.40.4.4 25312 d.58.13.1 39311 d.104.1.1 40780 d.138.1.1 41456 1ej6B 1275 2.79e+01 i.7.1.1 45968 1pvxA 194 2.86e+01 1axkA b.29.1.11 24341 1cr5A 189 2.90e+01 1cr5A b.52.2.3 26931 d.31.1.1 38465 1jkxA 212 2.90e+01 c.65.1.1 66813 1gsa 316 3.01e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1q15A 503 3.07e+01 c.26.2.1 -6625 d.153.1.1 -11400 1qwtA 255 3.18e+01 unknown_sccs -3329 1uxxX 133 3.20e+01 b.18.1.10 -3107 1ns5A 155 3.24e+01 c.116.1.3 80705 1h4gA 207 3.25e+01 b.29.1.11 70863 1ia8A 289 3.33e+01 1ia8A d.144.1.7 62112 1rypH 205 3.39e+01 d.153.1.4 41876 1jpc 109 3.41e+01 1b2pA b.78.1.1 27986 1jksA 294 3.44e+01 d.144.1.7 71710 1iqaA 160 3.58e+01 b.22.1.1 71274 1n9eA 787 3.69e+01 b.30.2.1 -3529 d.17.2.1 -9278 d.17.2.1 -9279 1ugmA 125 3.76e+01 1gefA 123 3.84e+01 1gefA c.52.1.18 60465 1smlA 269 3.91e+01 1smlA d.157.1.1 42053 1jxpA 186 3.93e+01 1jxpA b.47.1.3 26402 1kuuA 202 3.94e+01 d.153.2.1 73019 1f8rA 498 3.96e+01 1f8rA c.3.1.2 30410 d.16.1.5 37974