# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1b24A	188	3.09e+00	1b24A	d.95.2.1	40573
				d.95.2.1	40574
1k4zA	159	3.47e+00		b.80.5.1	72070
1s6tA	285	4.92e+00		c.37.1.5	-7040
1vkjA	285	4.92e+00			
1qtnA	164	7.46e+00	1pauA	c.17.1.1	30999
1h4rA	314	9.48e+00		a.11.2.1	65616
				b.55.1.5	65617
				d.15.1.4	65618
1o66A	275	9.64e+00		c.1.12.8	-5590
1m3uA	264	1.29e+01		c.1.12.8	84784
1dkgA	197	1.59e+01	1dkgA	b.73.1.1	27812
				h.1.9.1	45626
1hx6A	394	1.81e+01	1cjdA	b.121.2.1	58995
				b.121.2.1	58996
1oeyA	83	1.97e+01		d.15.2.2	-9162
1s2kA	206	2.08e+01		unknown_sccs	-3494
1umnA	165	2.23e+01		a.25.1.1	-656
1fnnA	389	2.40e+01	1fnnA	a.4.5.11	16129
				c.37.1.20	32426
1ukmB	128	2.67e+01		d.169.1.1	-11625
1vh6A	145	2.82e+01		unknown_sccs	-617
1to6A	371	2.91e+01			
2arcA	164	3.02e+01	2arcA	b.82.4.1	28148
1meoA	209	3.32e+01		c.65.1.1	79035
1ii7A	333	3.44e+01	1ii7A	d.159.1.4	62415
1qgoA	264	3.91e+01	1qgoA	c.92.1.2	35596
1auoA	218	3.99e+01	1auoA	c.69.1.14	34716