PFRMAT RR
TARGET T0250
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MTNVLYQHGTLGTLMAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLD
GKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIK
NEMLSENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQD
IRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQ
NFETFQQHFPVNNETFVKAKIDYKDVAEEIREAE
38 72 0 8 0.5117
11 190 0 8 0.4947
11 56 0 8 0.35785
5 153 0 8 0.31875
65 90 0 8 0.3145
155 195 0 8 0.30005
56 92 0 8 0.29325
95 192 0 8 0.2771
11 163 0 8 0.27455
103 192 0 8 0.27285
112 174 0 8 0.255
25 190 0 8 0.2465
172 192 0 8 0.2448
95 158 0 8 0.23205
170 192 0 8 0.2244
113 169 0 8 0.2125
111 158 0 8 0.2125
47 90 0 8 0.2125
8 22 0 8 0.2125
42 125 0 8 0.2091
71 113 0 8 0.20315
111 197 0 8 0.20145
7 38 0 8 0.1972
3 53 0 8 0.1972
73 209 0 8 0.1921
49 111 0 8 0.1921
22 53 0 8 0.1921
73 123 0 8 0.187
38 176 0 8 0.187
109 205 0 8 0.1819
77 219 0 8 0.1819
END