Best Alignments for T0249

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1jgsA/T0249-1jgsA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1jgsA/T0249-1jgsA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.8398e-031.7558e-05 a.4.5.28
1lj9A/T0249-1lj9A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1lj9A/T0249-1lj9A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.1084e-027.1987e-04 a.4.5.28
1bjaA/T0249-1bjaA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1bjaA/T0249-1bjaA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 9.4193e-025.4769e-03 1bjaA a.4.5.9
1okrA/T0249-1okrA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1okrA/T0249-1okrA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 9.4228e-024.0866e-03 unknown_sccs
1j5yA/T0249-1j5yA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1j5yA/T0249-1j5yA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.2459e-014.5961e-03 d.94.2.1
a.4.5.1
1lnwA/T0249-1lnwA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1lnwA/T0249-1lnwA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.4168e-011.0136e-02 a.4.5.28
1lvaA/T0249-1lvaA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1lvaA/T0249-1lvaA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.0512e-015.5627e-03 a.4.5.35
1lea/T0249-1lea-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1lea/T0249-1lea-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.1899e-018.2964e-02 1lea a.4.5.2
1p4xA/T0249-1p4xA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1p4xA/T0249-1p4xA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.1273e+004.6717e-02 a.4.5.28

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001