# List of top-scoring protein chains for T0249.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ku9A 152 3.62e-02 a.4.5.36 77544 1jgsA 138 2.32e-01 a.4.5.28 66683 1a8y 367 2.42e-01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1j2qA 237 3.45e-01 d.153.1.4 84029 1e87A 118 4.88e-01 1b6e d.169.1.1 42327 1j5yA 187 5.91e-01 a.4.5.1 71592 d.94.2.1 71593 1r72A 211 5.99e-01 unknown_sccs -215 unknown_sccs -5981 1o99A 511 8.30e-01 c.105.1.1 81235 c.76.1.3 81236 1o98A 511 8.36e-01 c.105.1.1 86684 c.76.1.3 86685 1vjzA 341 9.66e-01 c.1.8.3 -5318 1r0vA 305 1.02e+00 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1fm5A 199 1.20e+00 1fm5A d.169.1.1 42330 1cjyA 749 1.23e+00 1rlw b.7.1.1 23178 c.19.1.2 34986 1o3sA 200 1.53e+00 a.4.5.4 86609 b.82.3.2 86610 1vicA 262 1.59e+00 c.68.1.13 -8252 1e08A 371 1.71e+00 i.4.1.1 45914 1ntyA 311 1.75e+00 1o5lA 213 1.98e+00 b.82.3.2 -4915 1gegA 256 2.25e+00 1ybvA c.2.1.2 29888 1aocA 175 2.42e+00 1aocA g.17.1.5 44817 1o60A 292 2.46e+00 c.1.10.4 -5549 1rcuA 195 2.54e+00 unknown_sccs -7279 1i6xA 209 2.71e+00 a.4.5.4 83673 b.82.3.2 83674 1i5zA 209 2.88e+00 a.4.5.4 83669 b.82.3.2 83670 1g6nA 210 2.89e+00 2cgpA a.4.5.4 16100 b.82.3.2 28139 1hw5A 210 3.00e+00 2cgpA a.4.5.4 16098 b.82.3.2 28137 1v7wA 807 3.03e+00 1o3tA 200 3.27e+00 a.4.5.4 86611 b.82.3.2 86612 1cgpA 205 3.60e+00 a.4.5.4 16096 b.82.3.2 28135 1i1sA 96 3.94e+00 1bjaA a.4.5.9 16124 1bjaA 95 4.01e+00 1bjaA a.4.5.9 16122 1fjgH 138 4.16e+00 1seiA d.140.1.1 41468 1an7A 136 4.17e+00 1seiA d.140.1.1 41465 1o0iA 138 4.31e+00 d.38.1.5 86532 1ruoA 209 4.37e+00 2cgpA a.4.5.4 16105 b.82.3.2 28144 1bjz 207 5.82e+00 2tct a.4.1.9 16065 a.121.1.1 19242 1mh6A 125 5.88e+00 d.32.1.2 79116 1ewjA 126 5.97e+00 1ecsA d.32.1.2 59526 2tct 207 6.27e+00 2tct a.4.1.9 16063 a.121.1.1 19240 1i6zA 135 6.34e+00 a.7.7.1 61861 1dpfA 180 6.39e+00 1ctqA c.37.1.8 32046 2trt 217 7.17e+00 2tct a.4.1.9 16064 a.121.1.1 19241 1q1hA 110 7.25e+00 unknown_sccs -262 1l8bA 190 7.33e+00 d.86.1.1 73683 1oyiA 82 7.78e+00 a.4.5.19 -292 1ecsA 126 7.82e+00 1ecsA d.32.1.2 59407 1j2pA 246 8.03e+00 d.153.1.4 84022 1qpiA 203 8.04e+00 2tct a.4.1.9 16072 a.121.1.1 19249 1fp2A 352 8.09e+00 1fpxA a.4.5.29 59941 c.66.1.12 59942 1ipc 217 8.46e+00 1gt6A 269 9.36e+00 c.69.1.17 76342 1tib 269 9.60e+00 3tgl c.69.1.17 34738 1lj9A 144 9.79e+00 a.4.5.28 78035 1gljO 501 1.01e+01 1glcG c.55.1.4 33525 c.55.1.4 33526 1glaG 501 1.01e+01 1glcG c.55.1.4 33507 c.55.1.4 33508 1bu6O 501 1.01e+01 1glcG c.55.1.4 33499 c.55.1.4 33500 1i94H 138 1.11e+01 1seiA d.140.1.1 61999 1jipA 403 1.16e+01 a.104.1.1 66748 1o88A 353 1.18e+01 b.80.1.1 81178 1lea 84 1.28e+01 1lea a.4.5.2 16085 1iq5B 27 1.30e+01 1j75A 67 1.35e+01 a.4.5.19 62673 1i1gA 141 1.43e+01 a.4.5.32 65982 d.58.4.2 65983 1ng2A 193 1.45e+01 b.34.2.1 85660 b.34.2.1 85661 1uecA 193 1.46e+01 b.34.2.1 88481 b.34.2.1 88482 1r4vA 171 1.47e+01 unknown_sccs -1221 2phkA 277 1.48e+01 1cdkA d.144.1.7 41637 1fyeA 229 1.51e+01 1fyeA c.23.16.4 31477 1cs6A 382 1.60e+01 1cs6A b.1.1.4 21760 b.1.1.4 21761 b.1.1.4 21762 b.1.1.4 21763 1dc1A 323 1.64e+01 1dc1A c.52.1.11 33321 1jpdX 324 1.65e+01 c.1.11.2 67014 d.54.1.1 67015 1l0gA 358 1.66e+01 e.3.1.1 73400 1ql6A 298 1.75e+01 1cdkA d.144.1.7 41636 1phk 298 1.79e+01 1cdkA d.144.1.7 41635 1pk0A 507 1.80e+01 e.41.1.1 -11979 1k8tA 510 1.83e+01 e.41.1.1 68316 1vh1A 256 1.84e+01 c.68.1.13 -8244 1res 43 1.93e+01 1ret a.4.1.2 16023 1i8kB 124 1.96e+01 b.1.1.1 71131 1jm6A 407 1.98e+01 a.29.5.1 66876 d.122.1.4 66877 2a2uA 181 1.99e+01 1mup b.60.1.1 27135 1iicA 422 2.01e+01 1nmtA d.108.1.2 62422 d.108.1.2 62423 1ollA 188 2.03e+01 b.1.1.4 -2690 b.1.1.4 -2691 1dcjA 81 2.08e+01 1dcjA d.68.3.3 59115 1e8gA 560 2.08e+01 1qltA d.58.32.1 39455 d.145.1.1 41718 1lvaA 258 2.08e+01 a.4.5.35 74276 a.4.5.35 74277 a.4.5.35 74278 a.4.5.35 74279 1qltA 560 2.11e+01 1qltA d.58.32.1 39457 d.145.1.1 41720 1hyqA 263 2.12e+01 1hyqA c.37.1.10 61412 1lnqA 336 2.16e+01 c.2.1.9 74049 f.14.1.1 74050 2act 220 2.17e+01 1cs8A d.3.1.1 37002 1jioA 403 2.27e+01 a.104.1.1 66747 1p6fA 242 2.35e+01 b.1.1.4 -2692 b.1.1.4 -2693 1aec 218 2.47e+01 1cs8A d.3.1.1 37003 1pujA 282 2.51e+01 c.37.1.8 88294 1o6dA 163 2.53e+01 c.116.1.3 -6689 1omsA 121 2.57e+01 unknown_sccs -8993 1jcuA 208 2.59e+01 d.115.1.1 71634 1ptmA 329 2.59e+01 unknown_sccs -8456 1bxnA 485 2.62e+01 1burA c.1.14.1 29376 d.58.9.1 39282 1ps6A 328 2.63e+01 unknown_sccs -8458 1j2rA 199 2.65e+01 unknown_sccs -6799 1gph1 465 2.73e+01 1ecfB 1sssA 205 2.73e+01 1avmA a.2.11.1 15738 d.44.1.1 38735 1qzzA 374 2.76e+01 a.4.5.29 -277 c.66.1.12 -8045 1hw1A 239 2.83e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1ao0A 459 2.86e+01 1ecfB c.61.1.1 34049 d.153.1.1 41816 1e2xA 243 2.86e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1fs0G 230 2.89e+01 1fs0G c.49.2.1 59999 1p9yA 121 3.02e+01 unknown_sccs -8996 1mkp 144 3.04e+01 1vhrA c.45.1.1 32654 1o7tA 309 3.04e+01 c.94.1.1 86645 1r1nA 309 3.11e+01 c.94.1.1 -8659 1d9yA 309 3.12e+01 1mrp c.94.1.1 35798 1jhhA 202 3.17e+01 a.4.5.2 63060 b.87.1.1 63061 1r22A 122 3.22e+01 1rh5A 436 3.24e+01 unknown_sccs -12298 1jhfA 202 3.24e+01 a.4.5.2 63057 b.87.1.1 63058 1rhzA 436 3.26e+01 unknown_sccs -12299 2nllB 103 3.36e+01 2nllB g.39.1.2 45115 1tfr 305 3.42e+01 1tfr a.60.7.1 18081 c.120.1.2 33351 1m7jA 484 3.49e+01 b.92.1.6 78732 b.92.1.6 78733 c.1.9.11 78734 1v4yA 496 3.52e+01 b.92.1.6 -5089 b.92.1.6 -5090 c.1.9.11 -5436 1rk6A 496 3.52e+01 b.92.1.6 -5087 b.92.1.6 -5088 c.1.9.11 -5435 1ud9A 245 3.56e+01 1eupA 403 3.63e+01 1rom a.104.1.1 18967 621p 166 3.65e+01 1ctqA c.37.1.8 31988 1oz9A 150 3.78e+01 unknown_sccs -10588 1fmjA 351 3.80e+01 c.37.1.5 59879 1lf0A 166 3.83e+01 c.37.1.8 77913 1r1tA 122 3.83e+01 1hfeL 421 3.97e+01 1fehA c.96.1.1 36018 d.58.1.5 39001