# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j5yA 187 1.15e-02 a.4.5.1 71592 d.94.2.1 71593 1lj9A 144 1.16e-01 a.4.5.28 78035 1bjaA 95 2.56e-01 1bjaA a.4.5.9 16122 1ntyA 311 2.62e-01 1l9vA 317 3.52e-01 d.13.2.1 73760 d.216.1.1 73761 1gheA 177 5.03e-01 d.108.1.1 76222 1p2fA 220 6.72e-01 a.4.6.1 87720 c.23.1.1 87721 1bia 321 7.97e-01 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1lvaA 258 9.79e-01 a.4.5.35 74276 a.4.5.35 74277 a.4.5.35 74278 a.4.5.35 74279 1aisB 200 9.81e-01 1aisB a.74.1.2 18384 a.74.1.2 18385 1fp2A 352 1.04e+00 1fpxA a.4.5.29 59941 c.66.1.12 59942 1rcuA 195 1.71e+00 unknown_sccs -7279 1ub9A 100 1.74e+00 a.4.5.28 -231 1jhfA 202 2.10e+00 a.4.5.2 63057 b.87.1.1 63058 1lnwA 147 2.20e+00 a.4.5.28 78104 1on2A 142 2.22e+00 a.4.5.24 87103 a.76.1.1 87104 1okrA 123 2.25e+00 unknown_sccs -235 1fmjA 351 2.41e+00 c.37.1.5 59879 1o70A 324 2.92e+00 b.118.1.1 81115 b.118.1.1 81116 1q1hA 110 3.09e+00 unknown_sccs -262 1cuk 203 3.19e+00 1hjp a.5.1.1 16273 a.60.2.1 17946 b.40.4.2 25265 1vicA 262 4.11e+00 c.68.1.13 -8252 1aocA 175 4.46e+00 1aocA g.17.1.5 44817 1opc 110 4.81e+00 1opc a.4.6.1 16231 1j75A 67 5.03e+00 a.4.5.19 62673 1scfA 273 5.35e+00 1exzA a.26.1.2 16873 1hdmA 201 5.40e+00 1iakA b.1.1.2 21583 d.19.1.1 38157 1uldA 150 5.90e+00 b.29.1.3 -3423 1hw1A 239 6.48e+00 1e2xA a.4.5.6 16111 a.78.1.1 18441 1s3jA 155 6.65e+00 a.4.5.28 -227 1f2tA 149 7.28e+00 1f2tA c.37.1.12 32373 1mkmA 249 7.73e+00 a.4.5.33 79242 d.110.2.2 79243 1r72A 211 8.26e+00 unknown_sccs -215 unknown_sccs -5981 1jvr 137 9.19e+00 1jvr a.61.1.2 18132 1dcjA 81 9.30e+00 1dcjA d.68.3.3 59115 1gxqA 106 1.03e+01 a.4.6.1 70721 1c8uA 285 1.10e+01 1c8uA d.38.1.3 38547 d.38.1.3 38548 1vid 221 1.21e+01 1vid c.66.1.1 34178 1b79A 119 1.25e+01 1b79A a.81.1.1 18451 1kmvA 186 1.32e+01 c.71.1.1 72757 1o0iA 138 1.38e+01 d.38.1.5 86532 1fzkB 99 1.44e+01 1agdB b.1.1.2 60151 1iujA 106 1.44e+01 unknown_sccs -9953 1je8A 82 1.44e+01 a.4.6.2 77108 1tbxA 99 1.46e+01 1sgvA 316 1.51e+01 b.122.1.1 -5120 unknown_sccs -10148 1h4xA 117 1.55e+01 1auz c.13.2.1 60626 1gt6A 269 1.57e+01 c.69.1.17 76342 1om0A 274 1.58e+01 c.1.8.5 87058 1r0vA 305 1.63e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1khyA 148 1.66e+01 a.174.1.1 77410 1paz 123 1.67e+01 1bqk b.6.1.1 22878 1lk2B 99 1.71e+01 b.1.1.2 -2576 1kn1A 160 1.85e+01 a.1.1.3 77455 1tib 269 1.93e+01 3tgl c.69.1.17 34738 1mzbA 136 1.95e+01 unknown_sccs -266 1hlb 158 1.97e+01 1hlb a.1.1.2 15625 1mmsA 140 2.02e+01 1mmsA a.4.7.1 16247 d.47.1.1 38766 1bpyA 335 2.31e+01 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1e87A 118 2.36e+01 1b6e d.169.1.1 42327 1iq4A 179 2.44e+01 1iq4A d.77.1.1 62641 1fzoB 99 2.46e+01 1agdB b.1.1.2 60157 1regX 122 2.55e+01 1regX d.58.27.1 39406 1r6rA 100 2.70e+01 unknown_sccs -1071 1fds 327 2.87e+01 1fds c.2.1.2 29838 2tct 207 2.94e+01 2tct a.4.1.9 16063 a.121.1.1 19240 1fcyA 236 3.02e+01 2lbd a.123.1.1 19282 1go3E 187 3.02e+01 b.40.4.5 83054 d.230.1.1 83055 1p9yA 121 3.14e+01 unknown_sccs -8996 1f80D 81 3.17e+01 1acp a.28.1.1 59686 1nmeA 146 3.27e+01 c.17.1.1 85874 1dseA 292 3.36e+01 1ryc a.93.1.1 59130 1vin 268 3.39e+01 1vin a.74.1.1 18354 a.74.1.1 18355 1b24A 188 3.43e+01 1b24A d.95.2.1 40573 d.95.2.1 40574 1i58A 189 3.45e+01 1b3qA d.122.1.3 61773 1fb6A 105 3.48e+01 1thx c.47.1.1 32739 1nbaA 264 3.52e+01 1nbaA unknown_sccs 31753 1qo0D 196 3.57e+01 1qo0D c.23.1.3 31125 1v8cA 168 3.59e+01 d.15.3.1 -9175 unknown_sccs -11012 1dvpA 220 3.68e+01 1dvpA a.118.9.2 19216 g.50.1.1 45358 1oeyJ 107 3.78e+01 d.15.2.2 -9168 1bm9A 122 3.78e+01 1bm9A a.4.5.7 16116 1nznA 126 3.84e+01 a.118.8.1 -1616 1hg4A 279 3.84e+01 1lbd a.123.1.1 19333 1iakA 199 3.85e+01 1iakA b.1.1.2 21625 d.19.1.1 38199 1go3F 107 3.87e+01 a.60.8.2 65407